Nymphaea colorata (blue-petal water lily): 116250284
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Entry
116250284 CDS
T07418
Name
(RefSeq) ubiquitin receptor RAD23b-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03420
Nucleotide excision repair
ncol04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116250284
09124 Replication and repair
03420 Nucleotide excision repair
116250284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ncol03051
]
116250284
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116250284
Proteasome [BR:
ncol03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
116250284
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
116250284
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_3
Dsc3_N
UBA_RAD5A
Rad60-SLD_2
Crinkler
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
116250284
NCBI-ProteinID:
XP_031479763
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Position
3:complement(22494180..22502901)
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AA seq
397 aa
AA seq
DB search
MKLTVKTLKGSHFEINVQPNDTVIAVKKQIEEIQGKDNFPYAQQLLIHSGKVLKDETTLE
DNKVSEDSFLVVMLSKSKSSGQGGTSSIQLEQSSAPSSVPPAPASVPPAPASVPPAPTPL
PVPQTPSEEVAPSSAAVSDRATEVTADPYGQAASNLVAGNNLEETIQQLIDMGGGSWDRE
TVTRALRAAYNNPERAVDYLYSGIPATAEVAVSVAGVPSSQAGSQAATAPTDAGATGNAP
PSGGPNASPLNLFPQGQGAPGLGTTGAGGSSLDFLRNNPQFLALRSMVQANPQILQPMLQ
ELSKQNPQLLRLIQEHQAEFLQLINEPLEGSEGDIFEQLEQDMPQSISVTPEEREAIERL
EAMGFDRALVIEAFLACDKNEELAVNYLLENAGDYED
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaccgtgaagacattgaaaggaagccatttcgagattaatgttcaacccaat
gatacggttatcgccgttaagaagcagatagaagaaatacaagggaaagataactttcca
tatgcgcagcagttgctgattcatagtggcaaggtcttgaaagatgagacaactttggaa
gacaataaagttagtgaagatagtttcctggttgtgatgctcagtaagagtaaatcctct
gggcaaggtggaacctcgtcgattcagctggaacagtcttcggcaccaagttctgttcct
cctgctcctgcttctgttcctcctgctcctgcttctgttcctcctgctcccactccattg
cctgtgccacaaaccccttcagaagaagtggccccttcaagcgcagcagtttctgataga
gccaccgaggtgactgctgatccatatggtcaggctgcctcaaacttggttgcaggtaat
aatcttgaggaaacgattcagcaattgattgacatgggtggaggcagctgggacagggag
actgttacacgtgcacttcgtgctgcttataacaatcctgaacgagctgttgactattta
tattctggcattccagcgacggcagaagttgctgtgtctgtggctggtgttccttcaagc
caagcaggaagtcaagcggcaactgctcccacagatgctggcgctacaggaaatgcaccc
ccttctggagggcctaatgcatctccactgaacttgtttcctcagggacaaggtgctcct
ggacttggaacaactggtgctgggggtagttctctagatttcctccggaataacccacag
ttcttagctttacgatccatggtccaggcaaatccgcagattttacagcctatgcttcaa
gagctaagtaagcagaacccacagcttctaaggctgatccaggagcaccaggctgagttc
cttcagttgattaatgagccactagaaggatctgaaggagatatatttgaacagctcgag
caggacatgccccagtcaataagtgttacgcccgaggagagggaggctattgaacgactt
gaagcaatggggttcgacagggcactcgtcattgaggcatttttggcatgtgacaagaat
gaggaacttgcagtgaactatttgttagaaaatgctggtgactatgaagattga
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