Nymphaea colorata (blue-petal water lily): 116250740
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Entry
116250740 CDS
T07418
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncol03036
]
116250740
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116250740
microRNA pathway
RISC loading complex
116250740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116250740
NCBI-ProteinID:
XP_031480502
LinkDB
All DBs
Position
3:24106940..24132019
Genome browser
AA seq
1651 aa
AA seq
DB search
MNYREENLDEIEEKETDVAGREVLKDNKFFQVFEAMEEMNHLKRCLDEKEEPEPKMAKKE
GFGLGSRLKDSDMRSYQLEAYEAALQRNTIGWLETGSGKTMIAIMLMKEIARQLRDGGDK
RLIIFLAPTVHLVNQQYSVIKTHTDLHVAEYYGAKGIDDWDLRCWQKETCEKEVMVMTPQ
ILLDALRNAFITVDMVRLLIFDECHRATGNHPYAKIMLEYYHKTDHKPKVFGMTASPVIR
KGVSSAEDCEYQITQLEEILDSKVFILEDRTELEVHVPMAKEIKRYYGSWFVNEDLKGEL
DCLWTKFDTTAAVMESPTQMQFMEKSLRAKLTSFHWKILYCLEHLGILCAYEAVMVCMQR
DGVAPNIEENACPHILLRNYLKEALHIFKGYLSAEACDLLETEATLDPVYMNFISPKLCE
LVNTINALRNQKQVLCMIFVERIITAKVICWLIKKLKFLSHLSCDYLTGNNSAVNGLTVK
RQRMIMDSFREGKVNLLLTTDVAEEGIDVHNCSCVIRFDLPKTIRSYIQSRGRARYADSL
YVLMLERGNEEHKDLLYEIFRSERTMQDATSSRDKAPISKICSKDDEPVYTVSSTGATVT
ADSSVSLIFSYCQKLPGDKYFHPKPKFHYDLSGGFSECTLTLPPNAAFRHLKGPPAKSNH
HAKKLVCLDACKKLHEMKALDDHLLPLSEQLPDHTLAKEVNSAPGAGTTRRKELHGSATA
DALSGTWANVLSSITLQAYSLFFSCNTIEENYPGFIFLIKEELDEDVAHAEIDLFLHNNK
VVKARASPCGQVNLDTDQLMRSKVFHELFFNGLFGKLFHISKSSGVRQKILAMDDTALWP
FTNMYMLLPMSQQSAQSQGSPSIDWTIIDSCFAVAEFLKANNLPMAMNNFHVEAMQRQDD
KKPEKIHLANTSCGFHDLKDMVVLANHTGRFYYVADLVNDATADSPFDGSCESARPSYSS
YTDYFKKKYGINLHYNTQPLLRLKQSHNPHNLLFSKEGHEGGSLNSNGKSDPIQPAKQQQ
GYVYMPPELLIRLDVLRDILRSFYLLPSLVHRMESMILASQLRRAVGFHPNGHHIPTDLI
LEAVTTRRCAEAFCLERLELLGDSVLKYVVSCNLFLKYPEKHEGQLSALRSLVVCNATLH
RLATGRNLQNYIRDAPFDPLRWLAPGQRISRPVPCKCGVNSREVPLTHPADVESGAIKIG
VTCELGHRWLCSKTISDCLEALIGAYYISGGLEAACLFMRWVGIDCEHDQALVDEAIRKT
SRLTYAIEDKDIDSLESKLGYKFLNRGLLLEAITHASQQEAGLGCCYQRLEFLGDSVLDL
LITWHLFESHKDIDQGELTDLRSASVNNEKFAQASVKHNLQHHLLHGSELLLMQIKDYVK
FMKSFPENEPLPAYSKSKGPKVLGDLVESIAGAILIDSKLNLGEVWRVFKPILSPFPTPE
DLQLHPLRELGEICGEAGSPLCTECRKEGDQTIAKLTVQLKDGQLTAEGCDKTKNTALEQ
AALLLLDAMEKKGISHKRSIWRGKSERVQNILPCSHEQTTGLSPVERHHGEHSSTRSLDP
TVSKVSIDMKKGGPRTSLFQLCRDMNWVRPTFEPRASGPRFISKAILHVPDSDNIEVEGE
EKADKKSSMDSAALILLYKLEELAKCIIEEC
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgaactatcgtgaggagaacttggacgagatagaagagaaggaaacggacgttgctgga
agggaggtcctgaaggataacaaattctttcaggtatttgaagccatggaggaaatgaac
catctcaaaaggtgtttggacgagaaagaggagccggagccaaaaatggctaaaaaggag
ggcttcggcttggggagtaggctgaaggattctgatatgcgaagttaccagttggaggcg
tacgaagccgcattacagaggaatactattggttggctggagaccgggtctggtaagacg
atgatagctatcatgctcatgaaggaaatagctcggcagcttagagatggaggcgacaaa
cgtctcataattttcctggcgccgactgtacatcttgttaaccagcaatactcggtgatt
aaaacccacacggatttgcacgtcgccgagtattatggtgccaaaggcatagatgattgg
gatcttcgttgctggcagaaggaaacatgcgagaaggaggtaatggtcatgactccacag
atcttgttggatgccttgagaaatgcttttatcacagttgacatggtgagattgttaata
tttgatgagtgccaccgagctactggaaaccatccgtatgcaaaaataatgttggaatat
tatcacaagacagatcacaagccaaaagtatttggaatgactgcctcccctgtcattagg
aaaggtgtctcatcagcagaggattgtgaatatcaaattactcagttggaagaaattctg
gattctaaggtttttattttggaagatcgaactgagctagaagtgcatgtccctatggct
aaagaaattaaaaggtattatggttcatggtttgtcaatgaggacctcaaaggagagctg
gattgtttgtggacaaagttcgacacaactgcagcagtaatggagagtccaacacaaatg
cagtttatggagaaatctttaagagctaaactcactagttttcactggaaaattttgtac
tgcctggaacatcttgggatattatgtgcttacgaggctgttatggtgtgtatgcaaagg
gatggagttgcaccgaacatcgaagaaaatgcttgtccacacattcttttgcgaaattat
ttgaaggaggcattacacatttttaaagggtatttatcagctgaagcctgtgatctactg
gaaactgaagccactttggaccctgtatatatgaatttcatttctcctaagttatgtgaa
cttgtgaacacaatcaatgcacttaggaatcaaaagcaggtcctctgcatgatatttgtt
gagagaattattacggcaaaagtgatatgttggttgataaaaaagctcaagttcttgtcc
catctatcttgtgactacttgactggaaataactctgctgttaatggactgacagttaag
agacagagaatgattatggattcttttcgtgaaggaaaagtgaacctgttgctaactact
gatgtggctgaagaaggcattgatgtgcataattgctcctgtgtgatacggtttgacctg
ccaaaaactattcgaagctacatacagtcacgtggtcgggcacgatatgctgattcttta
tatgtcctcatgcttgaaaggggaaatgaagagcacaaagatttgctatatgaaattttt
agaagcgaaaggacaatgcaggatgcaacctcaagtagagacaaagcgcctatctccaaa
atatgctccaaagatgatgaacctgtttatacagtttcttccacaggtgcaacagtaact
gctgattcaagtgtcagtctcatttttagttattgccaaaagcttcctggagacaagtac
ttccatccgaagcccaagtttcattatgatttatctggtggtttttctgaatgtacattg
accttgcctcccaatgctgcatttcgacatctgaagggtcctcctgccaagagtaaccat
catgcgaagaaacttgtgtgcctagatgcatgcaagaagttgcatgaaatgaaagcatta
gatgatcatttgcttcctctcagtgaacagttgccagatcatacattggcaaaggaagta
aattcagcacctggggcaggcactacaaggaggaaggaactacatgggtcagccactgca
gatgctttatctggaacttgggcaaatgtgcttagttccattactttacaggcttatagc
ttattcttctcttgtaacaccattgaggagaactatccaggattcattttcttaatcaaa
gaggaattagatgaggacgttgcacatgcagagatagatctgtttttacataataacaaa
gtggtcaaggcacgtgcttctccatgcgggcaggtcaacttggacacggatcagttgatg
aggtcaaaagtttttcatgaactgttctttaatggtctctttgggaagttgtttcatata
tcaaaatcttctggagttcggcaaaagatactggcaatggatgacacagcattatggcct
tttacaaatatgtacatgctcttacccatgtctcagcaatctgcacaatcccaaggcagc
ccaagtattgattggacaattattgatagttgtttcgcagtagctgaatttctgaaggct
aacaatttaccaatggctatgaacaatttccacgtggaagccatgcaaagacaggatgac
aaaaaaccagaaaaaatacatttggctaatacttcttgtggttttcatgaccttaaggat
atggttgttttagccaaccatactggacgattttattatgtcgctgatttggtgaatgat
gcaacagctgatagtccatttgatggatcctgtgagtcagcgagaccaagttatagttcc
tatacagattatttcaagaaaaagtatgggattaaccttcattacaatacccagcctctg
ttgcggctaaaacaatcccataatccacataatcttcttttttcaaaggaaggccacgaa
ggtggttctctcaatagtaatggaaaatcagatccgatccagccagctaaacagcagcag
ggctatgtttatatgcctccagaacttttaattagactcgatgtgttaagggacatatta
aggtcattttacttattgccttcattagtccacagaatggagtcaatgatattggcatct
cagcttcgaagggcagttggttttcatcccaatggtcatcatattcctacagatttgatt
ttagaggctgtaacaactagaaggtgtgctgaagcattctgcctggagcgcttggaattg
ctcggggattctgtcttaaaatatgttgtgagctgcaacctttttctgaaatatccagaa
aaacatgaagggcaattatctgctcttagatcattggttgtatgtaatgcaactcttcat
agactggccactggtcgcaatttgcagaattatatccgagatgctccatttgatcctctt
cgttggcttgcccctggtcaacgtatctcacgccctgttccttgtaaatgtggtgtcaat
tctcgtgaagttccacttacacatcctgctgatgttgagagtggtgccattaaaattggt
gttacttgtgaacttgggcataggtggttgtgctcaaaaacaatatctgactgtctggag
gcactgataggagcatattatattagcggtggtctggaagctgcatgcttgttcatgaga
tgggttggtattgattgtgaacatgatcaagctttggttgatgaagccattaggaagaca
tcaagacttacttatgccatagaagataaagatattgattccttggagtcgaagcttggt
tacaaatttttgaatagaggtcttttattggaagccatcactcatgcatctcagcaggaa
gcaggcttgggctgttgctatcagcgacttgagtttctcggtgattctgtgttggatctt
ttgatcacatggcatctctttgaaagtcataaagacattgatcaaggggaattgactgat
ttacgctcagcatcggtgaacaatgaaaaatttgctcaagcttcagtcaagcataatctt
cagcatcatttactgcatggttctgagttgctcctgatgcagataaaagactatgtgaaa
tttatgaagagcttcccagagaatgagccccttcctgcctacagtaaatcgaaaggacca
aaagtgctgggagatttggttgaaagcattgctggtgcaatcttaattgacagcaaactt
aatcttggggaagtctggagggttttcaaacctattctttccccttttccaacaccggag
gacctgcaattgcatcctctacgggagttaggagaaatatgtggtgaggcaggatctcct
ctgtgcacggaatgtaggaaggagggagaccagaccattgcaaagcttactgtacaactg
aaggatggtcaattgactgcagaggggtgcgataaaactaaaaacactgcattggaacag
gctgctctccttttgttagacgcaatggagaaaaaaggcatttcacataaaagaagcatt
tggagagggaaatcagaaagggttcaaaatattttaccatgttcacatgaacagacaaca
ggtctatctcctgttgaaaggcatcacggtgaacacagctctaccagatcactggatcca
actgtctcaaaagtgtctatagatatgaagaaggggggaccaagaactagccttttccag
ctctgcagagatatgaattgggtcaggcccacctttgagcctagagcttctggaccgagg
ttcatttcaaaggccatcttgcatgtgcctgattctgataatattgaagtggagggggaa
gagaaagcggataagaagagctcaatggattctgctgcacttattctattatacaaacta
gaagaactggctaaatgcatcatcgaagaatgttga
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