Nymphaea colorata (blue-petal water lily): 116250962
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Entry
116250962 CDS
T07418
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116250962
09124 Replication and repair
03420 Nucleotide excision repair
116250962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116250962
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116250962
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116250962
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116250962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
DZR_2
Motif
Other DBs
NCBI-GeneID:
116250962
NCBI-ProteinID:
XP_031480835
LinkDB
All DBs
Position
3:27641308..27648407
Genome browser
AA seq
326 aa
AA seq
DB search
MESISTKLYTDDVSLLMVLIDTNPYFWSSIPTQVSSADAGGGNPPSSAASNNSAFSLFLS
HVLPFLNSILLLNQLNQVVVIATGVNSCDYIFDSSSASETGAANVKQPGKSANPLPLNSS
TILQRLESFIVEDRQLAKSDAAVASGKVHSLVSGSLSLALCYIQRLFRSGPIHPQPRILC
FQAAPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGSQHSAFLQQASFMTGGVYLKPQLSGL
FQYLTMVFATDLHSRRFLQLPKPVGVDFRASCFCHKKTINMGYVCSVCLSIFCKSHKKCS
TCGSAFNQGNSDQSQISDKKRKSSDS
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggagtctatatcaacgaagctttacacagatgatgtgagtctcctcatggttttgatc
gataccaacccttatttctggagttccatccctacccaggtgtcttcggccgacgctggt
ggcggaaaccctccatcttctgctgcctccaacaactcagccttctctttgttcttgagc
cacgttcttcctttcctgaactcgattcttctgctcaatcaactcaaccaagtggtcgta
attgctacgggtgtcaattcctgtgactacatatttgattcctcctcggcctcggagact
ggtgccgcaaacgtgaagcagccgggcaagtctgcgaatccgcttcctctcaattcgtcg
acgatcctgcagaggctcgaaagttttatcgtggaggaccggcagttagctaaaagcgat
gctgccgtggcgtccggaaaagtacattctcttgtctccggctcgctgtctctggcgctt
tgctatattcagagactatttcgttctggaccaattcatccgcaacctaggattctgtgt
tttcaggccgctccagatggaccagaacaatatgttgcagttatgaatgcaattttctca
gcacaacgctccatggtaccaatagattcttgtgtcatagggagtcagcattctgccttc
ttgcagcaggcttcattcatgactggaggggtgtatttgaagcctcaactcagcggccta
tttcagtacctcacgatggtttttgcaactgatctgcattctcgtcgatttttgcaactc
cccaagccagttggtgttgattttcgtgcctcatgcttttgccataaaaagacaattaat
atgggctatgtttgttctgtttgtctatccatattctgcaagtctcacaagaaatgttca
acctgtgggtcagctttcaatcagggcaactctgaccaatcgcagatatcagataagaag
agaaagagttccgactcctaa
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integrated database retrieval system
