Nymphaea colorata (blue-petal water lily): 116251531
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Entry
116251531 CDS
T07418
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116251531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116251531
Spliceosome [BR:
ncol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116251531
Complex C
U5 SnRNP specific factors
116251531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
116251531
NCBI-ProteinID:
XP_031481718
LinkDB
All DBs
Position
3:23284919..23302678
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNGGMGSQMAPPGTGPVVPPPAMQPSYSVPPSAAETEAALEEKARKWMQLNSKRYGDKR
KFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMP
WEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPF
DDEEPPLDYADNLLDVDPLEPIQLELDKEEDSAVYNWFYDHKPLVKTKLINGPSYRKWHL
SLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGD
EDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAF
YYDPLIHPITSINKDRRDKKVYEEGEDDDFEIPEGVEPLLQSTQLYTDTTAAGISLLFAP
RPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLAATKFFQSTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDLIDAMPEGIKQNKVRT
ILQHLSEAWRCWKANIPWKVPGLPVPVENMILRFVKSKADWWTNVAHYNRERIRRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQDVWDTSEGQCVVMLQTKFEKFFEKIDLTLLNRLLRLILDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVVDLLLLGLTRASEIAGPPQMP
NEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRFLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTFEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRITQEAFSNTKDGVWKLQNEQTKEETAIAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDVRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFKDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADVLLFAAYRWPMSKPSLVAESKDVFDQKASNKYWIDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLA
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGHLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKTISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTKPHHI
WPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAM
PPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWD
GEKSIILTCSFTPGSCSLTAYKLTPTGYEWGRLNKDTGSNPHGYLPTHYEKVQLLLSDRF
LGFYMVPDNGPWNYNFMGVKHTVSMKYGIKLGTPREFYHEDHRPTHYLEFSNLEEGEPAE
GEREDTFG
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcgggatggggtctcagatggcccctccgggaactggaccggtggttcca
ccgcctgcaatgcaaccttcctacagtgtcccgccatcggctgcggagacggaggccgcg
ctcgaggagaaggcgcggaagtggatgcagctgaactcgaagagatatggggacaaaagg
aagtttgggttcgtcgagactcagaaggaggacatgccccccgagcacgtccggaagatc
atcagagatcatggggatatgtcttccaaaaaatatcgccatgataaacgtgtttatcta
ggggcactaaaatttgttccacatgctgtctacaagcttcttgagaacatgccaatgccc
tgggagcaggttcgagatgtgaaagttttgtaccacataaccggagcgatcacctttgtc
aatgaaattccatgggtagttgaaccaatctaccttgcacagtggggcacaatgtggatc
atgatgagaagagagaagagggatcgacgtcatttcaagaggatgcgctttcctccattt
gatgatgaggagccgcccctagattatgctgacaacttgttagatgtggatcccctggag
cccatacagcttgagcttgataaagaagaagattctgcagtatataattggttttatgat
cacaagccgctggtgaagacaaagcttataaatggtcctagttatagaaagtggcatcta
tctctgccaataatggcaactcttcatcggcttgcaggacagcttctttctgacttgata
gacaggaactacttttatctatttgatatggagtctttttttactgctaaagctttgaac
atgtgcataccaggtggtcccaagtttgaacctttatatcgtgacatggagaaaggggat
gaggattggaatgaattcaatgacattaataagctaataatccgctctccattgaggact
gagtacagaatagcatttccgcatctttataacaatcggcctaggaaagtgaagcttgga
gtatatcatactccaatggtaatgtatatcaaaacagaagatcctgatttgccagcattc
tattatgatcctttgattcaccccattacttcaataaataaagaccgtcgagataagaaa
gtctatgaagaaggtgaagatgatgattttgagatccctgagggagtggaacctttactg
caaagcactcagctgtataccgatactacagctgctggcatatcccttttgtttgctcca
cgtccctttaatatgaggtctggtcgaatgcggagagcggaagatattcctcttgtgtca
gagtggtacaaggaacactgccctccgtcatatcctgtcaaggtaagggtgagctaccaa
aagctgttgaagtgctttgtgttaaatgagctgcatcataggcctccgaaggctcagaaa
aagaagcacctgttccggtcccttgcagctactaaattcttccagtcgacagagctagat
tgggctgaggcaggtctccaagtttgcaaacaaggctacaacatgttgaatcttttgata
catcggaagaatcttaactatcttcatcttgattacaattttaatttgaagcctgtgaag
acacttaccaccaaggagcgtaagaagtcacgttttggaaatgcttttcacttgtgccgt
gaaattctgcggttaacaaaacttgtggttgatgccaacatacagttccgtttggggaat
gtagatgcatttcaattggctgatggtttgcagtatattttctcacatgttgggcagcta
actggtatgtatcgttacaaatacagactcatgaggcaaatcaggatgtgtaaggacctg
aagcacttgatttactaccgttttaacactgggcctgttggaaaggggcctggatgtggt
ttctgggcgccaatgtggagagtttggctcttcttccttcggggaattgttcctttgctg
gaaagatggcttggcaatctacttgcacgtcagtttgagggccggcattcaaagggagta
gcaaagacagtcacaaagcaacgagttgaaagccattttgacttggagcttcgagctgct
gttatgcacgatcttattgatgcaatgccagaggggatcaagcagaacaaggtgagaact
atattacaacatcttagtgaagcttggcgctgttggaaggcaaacattccttggaaggtc
cctggacttccagtgcctgttgagaacatgattcttcggtttgtgaagtcgaaggctgat
tggtggacaaatgttgctcattataaccgtgaacgtatcagaagaggtgcaacagttgat
aaaacagtttgcagaaaaaatttaggtcgattaactcgcttatggcttaaagctgaacag
gagagacaacataattacttgaaagatggcccttatgttactcctgaagaagctgttgct
atctatacaactaccgttcactggttagagtcgaggaagttctcccccattcctttccct
ccattgtcatacaagcatgatacaaagcttcttattcttgctctagagaggttgaaggag
tcttacagtgtggcagtgagattgaatcaacagcagagggaagagcttggtcttattgag
caggcatacgacaacccacatgaggcattgtcacgtataaagcgtcatctgcttacacag
cgtgctttcaaagaggttggaattgagttcatggatttgtacagttacctaattcctgta
tatgagattgaacctcttgagaagatcacagatgcataccttgatcagtatttatggtat
gaaggtgacaagcgtcatctctttcccaattggattaagcctgcagattcagagccacct
cctcttttggtctataaatggtgtcaaggtataaacaatctgcaggatgtatgggacact
agtgagggacaatgtgttgtgatgcttcagacgaagtttgagaagttttttgagaaaata
gatttaactctgctgaacaggcttctgcgcttgattcttgaccacaatattgctgattat
gtaactgcgaaaaacaatgttgtcctgtcctacaaagacatgagccatacaaactcgtat
ggtcttatccgtggtcttcagtttgcatcttttgtagtgcagtattatggtttggtcgtc
gatctcttgcttcttggtttgacccgtgcaagtgagattgctggtcctcctcagatgcct
aacgaatttataacatactgggatacgaaggttgaaacacgtcatcccataaggttgtat
tcaaggtacattgacaaagttcacattcttttccgcttcactcatgaagaagcaagggac
ttgattcagcggttcctgacagagcatccagatccaaacaatgaaaacatggttggttat
aacaataagaaatgttggccaagagatgcacgtatgaggctcatgaaacatgatgttaat
cttgggagaagtgtcttctgggatatgaagaacagacttcctcggagcattacaacattt
gagtgggaaaacagctttgtttctgtatatagcaaggacaaccccaacctgctgttcagc
atgtgtggctttgaagtacggattttgccaaaaattcgaattacacaagaagcttttagc
aacacaaaagatggggtgtggaagttacagaatgagcaaaccaaggaggaaacagcaatt
gccttcttacgtgttgatgatgagcacatgaaggtgtttgaaaatcgtgtcaggcagatt
cttatgtcatcaggttcaacaacattcacaaaaattgtgaacaaatggaatacagcactt
ataggtttgatgacgtacttccgagaagcaactgtgcatactcaggagttgcttgatttg
cttgttaaatgtgaaaataagattcaaacacgtatcaagattggattgaattcaaaaatg
ccaagcagatttcctcctgtcatattttatactccaaaagaaattggtggacttggtatg
ttgtcgatgggtcacattctaattccacaaagtgatgtccggtatagtcaacaaacagat
gttggtgttactcattttcgaagtggtatgagccatgaagaggatcagctcattccaaat
ctgtaccgttatattcagccatgggaaagtgagttcaaagattcccagcgtgtgtgggct
gaatatgctctgaaaagacaggaggcacagtctcaaaataggcgcttgacactagaagat
cttgaggactcttgggatagaggtataccacgaattaatacccttttccaaaaggatcgg
catacactagcttatgacaaaggttggagagtgcgaactgattttaaacagtatcaggtt
ctaaagcaaaatcccttttggtggacccatcagcgccatgatgggaagttatggaacttg
aacaactatagaacggatgtcattcaggcacttggtggtgtagaaggaattctggagcat
acactatttaaaggaacatatttcccaacttgggaaggtcttttctgggagaaggcttct
ggttttgaagaatcaatgaaatataaaaagttgacaaatgcacaacgatctggtcttaac
caaattcctaatcgtcgctttacgctttggtggtctccaactattaatcgtgccaatgta
tatgttggttttcaagtccaactggatctgacagggatatttatgcatggaaaaatccca
accttgaagatatctttgattcaaatattccgtgcccatctttggcagaagatacacgag
agtgttgtgatggatctttgtcaggtgttagatcaggagttagatgcgctggaaatcgaa
actgtgcaaaaggagacaatacatcccagaaagagttataaaatgaacagctcttgtgca
gacgtccttctttttgctgcttacagatggccgatgtctaaacctagtctcgtggctgag
tcaaaagatgtctttgatcagaaagctagcaataagtattggatagatgtacagcttcgt
tggggagattatgattcgcatgacattgagcggtacactagagcaaagtttatggactac
acaactgataacatgtccatttacccatctccaactggggtaatgattggcattgatctt
gcttataatttgcactcggcatttggtaattggtttcctggatcaaagccgctgcttgct
caagccatgaataagatcatgaagtctaatcctgctttgtatgtcctgcgtgaaagaata
aggaaaggtctccagctttattcttctgagcctacagaaccctacttgtcatctcaaaac
tatggagagatcttcagcaatcaaattatatggtttgtggatgatacaaatgtgtaccgt
gttaccatccataaaacatttgaaggaaatctgaccactaagcctatcaacggtgccatt
ttcatattcaacccgaggactgggcatctgtttctgaaggtaatccatacaagtgtatgg
gcaggtcaaaaacgtcttggacagttggcaaaatggaaaactgctgaagaagttgctgca
ttagtacggtccttgcctgtggaagagcagccaaaacaaattattgttactcgcaagggc
atgcttgatccattggaggttcatttgcttgattttccaaatattgtgatcaagggtagt
gagttgcagttgcctttccaggcttgcttgaagattgagaaatttggtgatttaattctg
aaggctacagagccgcagatggttcttttcaatatatatgatgattggctgaagacaatt
tcatcatataccgcattctctcgtcttatcttgatattgcgagctctgcatgtgaacaat
gagaaggcaaaaatgctgctaaaacctgataaaaccattgtcacaaaacctcatcacatc
tggccatccctaacagacgatcagtggatgaaggttgaggttgctttgagggatctcatt
ctatctgactatgcaaagaagaataacgtgaacacctcggcactcactcaatctgaaatt
agagacataattcttggtgcagaaattactccaccctcacaacagaggcaacaaatcgct
gaaattgagaaacaggcaaaggaagctagccaacttactgcagtgacaacaaggactaca
aatgtgcatggtgatgagctcattgttaccactacaagtccgtatgagcaagcagccttt
ggatcaaaaactgattggcgtgttagggcaatttctgcaaccaatctttatcttcgagtc
aatcatatttatgtcaattcagatgatattaaggagacgggctacacatacatcatgcca
aagaatattttgaagaaattcatatgcattgcagatctccgcactcaaattgctggttat
ctatatggtgtgagtcctccagataatcctcaggttaaagaaattcgatgcatagcaatg
ccgcctcagtgggggactcatcaacaagtgcatctgccatctgcacttcctgagcatgac
ttcttgaatgatcttgaacctctaggttggatgcatacccaaccaaatgagctgccgcag
ctgtcacctcaggatctcacgtctcatgctcggattttagagaacaacaagcagtgggat
ggtgaaaaaagcatcattctgacttgcagttttacgccaggctcttgttccttgactgcc
tacaagcttacgccaactggttatgagtggggaaggctcaacaaggatacaggcagcaat
ccacacggttatttgccaacccattatgaaaaagtccagctacttctcagtgatcggttc
ctcggattctacatggtacctgataatggcccatggaattacaatttcatgggtgtaaaa
catactgtgagcatgaagtacggcatcaaactaggaacgcctagagagttctaccatgaa
gatcacaggccaactcattaccttgagttcagcaatctggaagagggtgaaccagctgag
ggagaaagggaagacacgttcggctag
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integrated database retrieval system
