Nymphaea colorata (blue-petal water lily): 116251562
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Entry
116251562 CDS
T07418
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03440
Homologous recombination
ncol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116251562
03450 Non-homologous end-joining
116251562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncol03032
]
116251562
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116251562
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
116251562
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
116251562
BRCA1-C complex
116251562
NHEJ (non-homologous end-joining)
MRX complex
116251562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
AAA
ABC_tran
AAA_16
RFC_C
GPW_gp25
AAA_22
Motif
Other DBs
NCBI-GeneID:
116251562
NCBI-ProteinID:
XP_031481763
LinkDB
All DBs
Position
3:complement(6645228..6678982)
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTVDKMLIKGIRSFSPENKHVITFYKPLTLIVGPNGAGKTTIIECLKHACTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTV
NPHTGEKVCLSYRCADMDREISALMGVSKAILENVIFAHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKMYRLKLENLQTLKDAALKLRESITQDQERAESVKA
QILHFEKKIQDVEVKIQQTEATLKDLRKLQDEINTNTTKRSTLFKLQQSQLSALAEENED
TDEELIEWQTKFQERIALLQSKISKLERDAQDATTMSSFHSKDINDYIREAGKLQAEAEA
YLSLKHDRDATVQRIVVQHNLGSAVVIPLSDDMALNLTNRAKARLKDLQKDLSAKRETND
VELKGLWKSFESVSSRCSEIEGQKMAKLEKKSDLLKRMKEVEEELGVLQLSEVDLSRIDA
KEKFLESEVQKRTLQVAERDFESNIHQKRTEIFSLDHKIKSLYREKDVIASDSEDRVKLG
LKKEELEGCKRKRAKIMDEYTDKIRTVLKGRVPSDKDLKKEITSALCILRKEHDDVNAKS
TEAEKEMKLVEMKIEDAKDNLLKLQKEMEAKRKYIGTKIQSLVQGPVEVDAFPKVLQEAM
ERRDVQKSEYSMANGMRQMFDPFERVARAHHYCPCCERPFSAEEEDQFVRKQRVKNANSM
EGLKLLAISSSNADAHFQQLDKLRTVYEEYVKLSNEAIPSTERNLKELAEELQNKIVAFE
DLVGVVAQTTAEKDLLESLIQPVENADRLWQEMQSLQRQVADLEYKLDVRSQGAKSLEEI
QTELNNLQETRDNLSRQLENLQEEQRHMNNDLSNLQMRWHASREEKLQASNKLIRVENLA
DELGRLSEQKSQLDLDEQILAEAFVPLSKEKDKLLKNYEELKVKFEHEYNEQAEILRNFQ
QEVETLATFASKIKEYDDARKDEKLKELQEKQSLAESQLRQCESRKQEITAELQKSKELL
HKQDQLKRNIDDNLNYRRTKAEVVELTHEIESLEEKVVKIGGFPAYEADLKRHMQEKERL
LSELNRCHGTLSVYQSNISKHKLDLKQSQYNDIDKRYFDQLIQLKTTEMANKDLDRYYHA
LDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISIHSDSEGSGSRSYSYRVVMQTGD
AELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLASALLRI
MEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRISKDELQHSIIESQDIFD
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtggacaagatgctgataaagggcatacgcagcttcagcccggagaacaag
cacgtcatcacattctacaagcccctcacccttatcgtcggccccaatggcgccggcaag
acgactataatcgagtgcctgaagcatgcctgcacgggggaattgccacccaatgcacgg
tccggtcatagttttattcatgacccgaaggtcgccggagagacggagactaagggacag
attaagcttcggttcaagacggcagccggtaaggacgtcgtgtgtatccggtcattccag
ttaacgcagaaggcatccaagatggagtataaggccatagaaagcgtgttgcagacggtt
aaccctcacaccggggagaaagtatgcttgagctaccgatgcgcagacatggatagggaa
atttctgctttaatgggagtctcaaaagctattttggaaaatgttatatttgctcaccaa
gatgaagcaaattggccgttgcaggacccctcaacattgaagaaaaagtttgacgatatt
ttttctgccaccagatatacaaaggccctagaggtaataaagaagcttcacaaggatcaa
gcacaggagataaagatgtataggcttaaattagagaatctccaaactttgaaagatgca
gcattgaagcttcgtgaaagcatcacccaagatcaagagagagcagaatctgtgaaagct
caaattcttcatttcgaaaagaaaattcaagatgttgaagtcaagatacaacagacagag
gcaactctgaaggatttgagaaaattgcaggatgaaataaatactaacactaccaaaaga
agtactctgtttaagcttcagcagtctcaactctctgcattagctgaggagaatgaagac
actgatgaggagctgatagaatggcaaactaagttccaagaaagaattgctttgctgcag
tcgaaaataagcaagctagaaagagatgcacaggatgctacaacaatgagtagtttccat
tcaaaggacattaatgattatattcgagaggctggaaagcttcaagctgaagctgaggct
tatttatccttgaagcatgatcgtgatgctacagttcagaggatagttgtgcagcataat
ttgggatctgctgttgttattccacttagcgatgacatggcacttaaccttacaaaccga
gccaaagcaaggttgaaggatcttcaaaaagacttaagtgctaaaagggaaactaatgat
gtggaactcaagggattatggaaaagcttcgagtcagttagttctaggtgcagcgaaatt
gaaggacagaagatggctaaattagagaaaaagtctgatctcctgaaacgcatgaaagag
gttgaagaagaattaggtgttcttcaactctctgaagtggacctatctagaattgatgca
aaagagaaatttctggaatccgaggttcaaaaacggacacttcaggttgcagagagagat
tttgagtcaaacatacaccagaagagaactgaaatatttagcttggatcacaaaataaaa
tcactttacagagaaaaggatgttattgccagtgattctgaagatagggtaaaattgggc
ctgaagaaagaagaattagaaggctgcaagagaaagcgtgcaaaaatcatggatgaatac
acagataaaataaggactgtactgaaagggagggttccttctgacaaagatcttaaaaag
gagatcacatctgcattatgcattcttagaaaagagcacgatgacgtaaatgcaaaatcc
acggaagcagagaaagagatgaaattggtggaaatgaaaatagaagatgctaaagataac
ttgttgaaattgcagaaagaaatggaagcaaaaaggaagtatattggcacaaaaattcag
tcgctagttcaaggaccagtcgaggttgatgctttccccaaagttttgcaagaggctatg
gagagaagagatgtacagaaaagtgagtattcaatggcaaatggcatgcggcaaatgttt
gatccttttgaaagagttgcacgtgctcatcattactgtccatgctgtgagcgcccattc
tcagcagaggaggaggaccagtttgttaggaagcaaagggtaaaaaatgcaaactccatg
gagggtctgaagttgttggctataagttcttcaaatgctgatgcacatttccagcaattg
gacaagctccgtacagtttatgaggaatatgtcaagctttcaaatgaagccattccttca
actgagagaaatttgaaagagcttgctgaagaactgcagaacaagattgtggcatttgaa
gatcttgtaggtgttgtagctcagactacggctgaaaaagatttgctggaaagcttgatt
caaccagttgaaaatgcagaccgcttatggcaagaaatgcagagtttacagcggcaggtt
gctgatttggagtataagcttgatgtcagatcccaaggagccaaatccttggaagagatc
cagactgaactgaataatctgcaagagaccagagacaatttgagtcggcaattggagaat
cttcaagaagagcaacggcatatgaacaatgatttgtcaaatctacagatgagatggcat
gcttccagagaggaaaagttgcaggcatctaataaattaattagagtcgagaacttggca
gatgagctaggtcgactctctgaacagaaatcccaattggatcttgacgagcaaatattg
gcagaagcttttgttccattatccaaagagaaagataaactgttgaagaattacgaagag
ttgaaggtcaaatttgagcatgaatacaatgaacaggccgaaatattaagaaatttccag
caggaagtggagacacttgcaacgtttgcttctaagattaaagaatatgatgatgcaagg
aaagatgagaagcttaaggagcttcaagaaaaacagtcattggctgaatctcaattgcga
caatgtgagagcaggaagcaagaaattacagcagaactgcagaagagtaaagagttgctg
cataagcaggaccaactgaaacgaaatattgatgacaacttgaattatagaagaacaaag
gctgaggttgtcgagcttactcatgagatagaatctcttgaagagaaagtcgtgaaaatt
ggtgggtttccagcttatgaagcagatctcaagagacacatgcaagagaaagagcgactt
ctctcagagcttaataggtgtcatggcaccctttctgtatatcagagcaacatttccaag
cataaacttgatcttaaacagtcacagtacaatgacattgacaagcggtattttgatcag
ctcatccaactcaagacaactgaaatggctaataaggacctggacagatattaccatgca
cttgacaaagcattaatgcgcttccacacaatgaaaatggaagaaataaacaaaataata
aaggaattatggcagcagacatataggggtcaagacattgattatataagcattcattcg
gattctgaaggttctggttctcgatcctacagttatcgggttgtaatgcaaactggtgat
gctgaacttgaaatgcgaggaagatgtagcgctggccagaaggttcttgcttctctcata
attcgattggcattggctgagactttctgtcttaattgtggcatacttgcacttgatgag
ccaacgacaaacttggatggtccaaactctgaaagtcttgcttctgctctcctgagaatt
atggaagacagaaaaggtcaagaaaattttcagctgatagtgatcactcatgatgaaagg
tttgcccagcttattggtcaacgtcagcatgcagagagatactatcgcatctcaaaggat
gaacttcaacacagcataattgagtctcaagatatattcgactga
DBGET
integrated database retrieval system
