Nymphaea colorata (blue-petal water lily): 116252323
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Entry
116252323 CDS
T07418
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116252323
03015 mRNA surveillance pathway
116252323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116252323
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116252323
5.6.2.5 RNA 5'-3' helicase
116252323
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116252323
mRNA cycle factors
Common to processing body (P body) and stress granule
116252323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
nSTAND3
NPHP3_N
UvrD-helicase
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
116252323
NCBI-ProteinID:
XP_031482358
LinkDB
All DBs
Position
4:21423501..21444921
Genome browser
AA seq
1267 aa
AA seq
DB search
MAAQPVVPNLYETASQPDTGDAYTFLEFNTQGDDYDYEFRELSQPIRSTVWSPDNSHLPT
TGAAAANESNDRDLPADTASANAAASSPRPTGTKGRSNQGVADALAAGIGGLSFEETGDE
EGFEFGKGGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWD
LSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVSIRWDIGLNKKRIAYF
IFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVN
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFGAP
GLPDLNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ
GELSSSDEKKYKALKRATEREITQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRM
HPSLSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNHMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLVFGGPAAVPGDSFPPVGSA
STNADKRGPRSKGHSYMPFGPPNGNHKPGVHPGGFPVPRLTLPPFPGGPHTQPYAIPTRG
AVHGPVGAVPQVPQSGNRGFGAGRGNAGGPIGGHLSHQQGSQQPLGNIGSSFNFPPMDNQ
NSQPSVGGPLSQSGLLTQIPPVQGINQNFREGFSLGGMSQDFFGDDFKSQGSHVAYNVAD
FSTQASQSGYGVDYVTQGTQGGFPGSFLNQNTQAGYSHLGTANDFITQDYMPHGSPGLFT
QVGFTDPSQDDSSQAQFGVAGPGPLQSQGLMNPLYSQPFTQYNSQPVNMQAPQQGQTAQN
QKLHYTG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcagcccgtcgtccccaacctctacgagactgcgtcccagcccgacacaggc
gacgcttacaccttcctagaattcaacacgcaaggcgacgactacgactacgaattcagg
gagctcagccagccgatcaggtcgaccgtgtggtctcccgacaactcgcacctccctacc
accggtgccgcggccgccaacgagtcgaacgaccgcgatctgcctgcggatacggcgtct
gccaacgcggccgcgtcgtctcccaggcctactgggacgaaaggccggtcgaaccagggc
gtggcagatgccttggctgcaggtatcggtgggctgagcttcgaggagactggggacgag
gagggatttgagtttggcaagggtggggatttcactgagcatgcgtgccggtattgcggg
gtgcagaaccctgcttgcgtcgtccgctgtaacgtcccgtcctgccgcaagtggttctgc
aattcaaggggcaacacgtccgggtctcatattgttaatcatctggttcgagccaaacac
aaagaagtatgccttcacaaagacagccctcttggagaaaccatccttgaatgctataac
tgtggttgtagaaatgtgttccttttagggttcatttctgctaagacggagagcgttgtg
gttctattgtgtagggagccctgcctgaacgttaatgcactgaaagatatgaattgggat
ctgagtcagtggtgcccacttattgatgatagatgcttccttccatggcttgtcaaggtt
ccatctgagcaagagcagttgagagcacgtcaaatcagtgctcaacaaataaacaaggtt
gaagaactttggaaaacaaatcccgatgcttctcttgaagatcttgagaaacctggtgta
gatgatgagcctcaacctgtggcccttaagtatgaagatgcttaccagtatcaaaatgtt
tttgctccactcgtgaagttggaggcagattatgataaaatgatgaaagagtcacaaagt
aaggacaatgtatccattcgttgggatattggccttaacaagaagcggattgcgtacttt
atcttcccaaaggaagacaatgagctgcgcttggtaccaggtgatgagttgcggctacga
tattcaggtgatgcagcccatcctgcttggcagtctgttggacatgtgatcaagctcact
gcacaagaggaagttgctcttgaacttcgtgctagtcagggggttcctgttgatgtcaat
catggatttagtgtggattttgtctggaaaagcactagctttgatcgcatgcagggagca
atgaagacttttgctgttgatgaaacaagtgttagtgggtacatataccatcatttgctg
ggccatgaagttgaggctcaggtggttcgtaacacgttgcctcgtcgttttggtgctcca
ggccttccagacctaaatgcttcacaggtttttgctgttaagagtgttctgcagaagcct
atcagcttgatacaaggtcctcctggtacaggaaagactgttacttctgcagctattgta
tatcacatggccaaacaaggacagggccaggtcttggtttgtgcaccaagtaatgttgca
gttgatcagcttgctgagaagataagtacaactggtttgaaggttgttagactctgtgcc
aaatcaagggaagctgttagctcacctgttgaacatctgacactacattatcaggttcga
caccttgatacgtcagaaaaaagtgagcttcacaagcttcagcaattgaaagatgaacaa
ggtgagctttccagcagtgatgagaaaaagtataaggctcttaaaagggcaacagaaagg
gagataacacagagtgcagatgtcatttgttgcacttgtgttggtgctggggatccacgc
ttagcaaattttaggtttcggcaggttcttattgatgagtctactcaggcaacagaacca
gagtgtcttattcctcttgttcttggtgttaagcaggttgttcttgtcggagatcattgc
cagcttggtccggtaattatgtgcaagaaggcagctcgtgctggtcttgcacaatcactt
tttgagcgccttgtgctgctgggtgtgaagccttttaggttacaggttcaatatcgtatg
cacccatcactgtcagaatttccctcaaacagcttttatgaaggtaccctccaaaacggg
gtgactattaatgagaggcagtcacctggtattgattttccatggcctgttccaaaccgt
ccaatgtttttctatgtccagatgggccaagaagaaatcagtgcaagtggaacatcctac
ctgaacaggactgaggctgcaaatgtagaaaagattgttactacatttttgaggagcgga
gtggttccaagccagattggagtcataacaccttatgaagggcaacgagcatacattgtg
aatcacatgtcaagaaatggagctcttagacagcagctatacaaagaaattgaggttgct
agtgttgattctttccaaggaagagagaaggattacataatactctcctgtgttaggagc
aatgagcatcagggcattgggttcctgaatgatccacgtagattaaatgtagctcttacc
cgagctcgttatggaattgtgatattgggaaatcctaaagttttgagcaaacaaccactt
tggaacagcttattgacacattataaggagcatgaatgtttggtggaaggcccgttaaat
aatctgaagcaaagtatggttcagttccagaagccaaagaagatctataatgatcgcaga
cttgtctttggtgggccagcagctgttcctggtgatagttttccccctgttggatctgca
agcaccaatgctgacaaaagggggcctcgtagcaaaggccattcgtatatgccttttggt
ccaccaaatggaaaccataagcctggcgttcatcctgggggatttcctgttccccgcctc
acgcttcccccatttccaggtggaccacatacacaaccatatgcaattccaacccgtggt
gcagttcatggacctgttggggctgtacctcaggtccctcagtctggaaatagaggtttt
ggtgccggacgtggaaatgctggcggtcctattggcggccatctttctcaccagcaaggc
tcgcaacaacctcttggaaatattggatcttcattcaactttccccctatggacaaccaa
aatagtcagccttctgttggtgggccattatcccagagtggattattaacccagatacca
ccagttcaaggaataaatcagaacttccgtgagggattttctcttggtggaatgtctcag
gatttctttggggacgatttcaagagtcaaggatctcatgttgcttacaatgttgctgat
ttctcaactcaggcttctcaaagtggatatggtgttgattacgtcactcaagggacacaa
ggtgggtttccagggagcttcttgaatcagaacacacaggctggttattctcatcttgga
actgcgaatgactttattactcaggattacatgcctcatggatccccaggtctttttact
caagttggcttcacggatccatctcaagatgattcctcccaagctcaatttggggttgct
ggacctggtcctctccagtctcaggggcttatgaatcctctctattcccagcccttcacg
cagtacaacagccaaccagtaaacatgcaagctccacagcagggccagactgcccaaaac
cagaaacttcattacactggctga
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