Nymphaea colorata (blue-petal water lily): 116253029
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Entry
116253029 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116253029
KO
K07573
exosome complex component CSL4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116253029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116253029
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116253029
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116253029
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
Ribosomal_L27
Motif
Other DBs
NCBI-GeneID:
116253029
NCBI-ProteinID:
XP_031483602
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Position
4:complement(24505747..24510530)
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AA seq
199 aa
AA seq
DB search
MGPAAKAKEGEVVTPGEVVGKGTEAVAGKGCYLSPHNNTIYASMTGRFTRSPSPPGSTEN
RHVLEVVSDKACGVVPEPGSVVLARVTKVMARMASVDIMCVGPKSVKEKFSGIIRQQDVR
ATEIDKVDMHLSFRPGDIVRAAVLSLGDARAYYLSTAKNELGVVSAESIAGATMVPITWT
EMQCPLTGQIEPRKVAKVT
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgggtccagcggcgaaggcgaaggagggggaggtggtcactcctggggaggtggtgggc
aaaggcacggaggcggtggcgggaaagggctgctacctttccccccataacaacaccatc
tatgcatccatgactggtcgctttaccagatctccttctcctcctggctccacagagaac
agacacgttcttgaagttgtgagcgataaagcatgcggtgtcgttcctgaacctggatcc
gtcgtgcttgctagagtaacaaaggtgatggctaggatggcttcggttgatataatgtgt
gttgggcctaagtctgttaaagagaagttctcgggtattattaggcaacaagatgttcga
gcaacagaaattgacaaggttgatatgcacttatcttttcgtcctggtgacattgtccgg
gctgctgttctgtctcttggggatgcacgagcctattacctttcaactgcaaagaatgag
ttgggtgtggtgtctgctgaaagtattgctggtgcaaccatggttcctatcacttggacg
gagatgcagtgtccactaacaggtcaaattgagccgagaaaagtggccaaggtaacttag
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