Nymphaea colorata (blue-petal water lily): 116253093
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Entry
116253093 CDS
T07418
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
ncol04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116253093
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116253093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116253093
04121 Ubiquitin system [BR:
ncol04121
]
116253093
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116253093
Enzymes [BR:
ncol01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116253093
Spliceosome [BR:
ncol03041
]
Complex B
Other components
Prp19 complex
116253093
Complex C
Prp19-CDC5 complex
116253093
Ubiquitin system [BR:
ncol04121
]
Ubiquitin ligases (E3)
U-box type E3
116253093
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
116253093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_HPS5
NBCH_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
U-box
KNTC1_N
Beta-prop_SPT8
zf-Nse
WD40_like
Beta-prop_VPS8
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
116253093
NCBI-ProteinID:
XP_031483715
LinkDB
All DBs
Position
4:complement(25709564..25718774)
Genome browser
AA seq
526 aa
AA seq
DB search
MFCAISGVTPEEPVVSKRSGLLFERRLIERHISEYGKCPVTGEPLTMEDIVSVKTNKAVK
PRPVQAASIPGMLGLFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARVKK
ERDEARALLAQAERQIPLNAPAGVPVNASVISNGKRAAEEEDLGPGGKRIRPGISAAIIE
ELTECNAVLSGQRKKRQIPPTLASKESLMSYTQISSHPLHKTNKPGILSVDIHPTKDVIA
TGGVDTNSIIFDRSSGQILSTLSGHTKKVTCVKFVPRDELFITGSGDKTVRVWRGSENDD
YSCLHVLKDHTAEVQAVSVHATHNYFVTASMDATWCFYDITSGMCLSQVQKADDSAGEDG
YTSAAFHPDGLILGTGTSGAAVRIWDVKTQTNVATFDGHVGPVTAISFSENGYFLATAAR
DGVKLWDLRKLKNFRSFSPYEPNTPTNSVEFDHSGAYLAIAGSDIRIYNVGSVKQEWDCI
NTLPDLSGTDRITSVKFGVDAKYLAVGTMDRNLRFFGLPVAGAEEP
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgttctgtgcaatatccggcgttacgccggaggagcccgtggtttcgaagagatccgga
cttctgttcgagagacggttgatcgaacgacatatatcggagtatgggaaatgtcctgtt
actggagagcctcttactatggaggacatcgtttcggtgaagacgaataaggccgtcaag
ccaaggcctgttcaagctgcaagcattccagggatgctcgggttgttccaaaatgagtgg
gatgctctgatgttgtctaattttgcactggagcagcagctgcatactgcgagacaagag
ctaagtcatgcattataccagcatgatgctgcttgccgagtcatagcaagagttaagaag
gaaagggatgaagcaagggctttactggctcaggcagagagacagattcccctcaatgca
cctgctggtgtcccagtgaatgcctcagttattagcaatggcaaaagagctgctgaagaa
gaggatttgggtcctggtggaaagagaatccgtcctggcatatctgcagctattattgag
gaactcacagaatgcaatgcagtactgtcagggcaaaggaagaagcgtcagattccccca
acattggcatcgaaagaatcgctaatgagttacactcagatttctagtcatccactgcac
aagaccaacaaaccaggcattctatctgtagatatccatccgacaaaagatgtcattgca
acaggtggtgttgacacaaattctataatttttgaccgatcttctggccagattctttcc
actcttagtgggcacacgaagaaggttacatgtgttaaatttgtgcctcgagatgagttg
tttataactggttcaggtgataagacggtccgtgtatggagagggtctgaaaatgacgac
tatagttgcctacatgtcctgaaggatcatacagccgaggtgcaagctgtatcagtacat
gccacacataattactttgtgactgcttcaatggatgccacatggtgcttttatgatatt
acttcaggaatgtgcctctcacaagtccagaaggctgatgattccgctggtgaggacggt
tatacttctgctgcttttcatcccgatggtcttatccttgggactggaacttcgggagct
gcagtcagaatttgggatgtaaagactcagacaaatgtagcaacatttgatggacatgtt
gggcctgttactgccatctccttctcagaaaatggatattttcttgcgacagcagcaagg
gatggtgtgaaactctgggatctgcgcaagttgaagaacttcaggtccttcagcccttat
gagccaaatacacctacaaattctgtggaatttgatcacagtggtgcctaccttgcaatt
gccggttcagacataaggatctataatgttggtagtgtcaagcaggaatgggattgtatt
aacaccttgccagatttgtcaggaacagatcgaattacgtctgtgaaatttggggttgat
gcgaaatacttggcagtgggaaccatggacagaaatcttcgattctttggcctgcctgtt
gctggagcagaagaaccgtga
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