Nymphaea colorata (blue-petal water lily): 116253356
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Entry
116253356 CDS
T07418
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030
DNA replication
ncol03420
Nucleotide excision repair
ncol03430
Mismatch repair
ncol03440
Homologous recombination
ncol03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116253356
03420 Nucleotide excision repair
116253356
03430 Mismatch repair
116253356
03440 Homologous recombination
116253356
03460 Fanconi anemia pathway
116253356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncol03000
]
116253356
03032 DNA replication proteins [BR:
ncol03032
]
116253356
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116253356
Transcription factors [BR:
ncol03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116253356
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116253356
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116253356
MMR (mismatch excision repair)
116253356
DSBR (double strand breaks repair)
HR (homologous recombination)
116253356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
OB_MEIOB_N
DUF223
zf-CCHC_5
RADX
Ole_e_6
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
116253356
NCBI-ProteinID:
XP_031483992
LinkDB
All DBs
Position
4:20997087..21001770
Genome browser
AA seq
838 aa
AA seq
DB search
MSVNLTRDAIAMVSEGKQDIKPVLQVYDIKLVMSQAANDRYRLLLSDGTHMQQSMLASQL
NHYVKSGQLQKGSIVQMIEYICNTIQNRKIIIVINLEVVLDKFDIIGEPKLYVGASANGP
AAPQVESVPAKSSPVLSRPATGNAQPYGVPYAAGHLGEGPNPGGSSLHPKAETGASVTNI
ANGKNYGISSHSNMANQNQTSNMHGRATPQSIYQPTPSYVNRGPIAKNEAPARIIPIAAL
NPYQGRWTIKARVTSKSELRRYNNPRGEGKVFSFDLLDSDGGEIRVTCFNLVADQFYDRI
NVGNVYLISKGSLKPAQKNFNHLNNEWEILLESTSTIEPCLEEDSSIPRQQFNFRPISEI
ESMENNSMVDIIGVVVSVHPSSTIMRKNGTETQKRTLQLKDMSGRSVELTIWGNFCNVEG
QRLQEMCDSGMRPVLAVKAGRVSDFSGKSVGTISTSQLFIDPEFPEAQRLREWFNREGKN
VATPSISRDNSMSGKTDVRKTVSQIKDEGLGRAEKPDWITVKAVVAFVKVDNFCYTACPL
MVGDRQCNKKVTNNGDGRWHCDRCDQDIPECDYRYLLQFQIQDHTGITWVTAFQEAGEEI
MGVSAKALYMLKHEEQDDVEFGKVIKTVLFNQYLFKLKVKEEIYSDEQRVKSTVVKAERL
NFAAECNCLFGLIGRLSRDELQTNPATISHGGNSYEMNSASGYRSAVSGYGGNSLGGNTG
SNTDGYNASLAYQSGFMGSGQGGGRPLNSFCNKCGGTDHNPMNCPGLRVAGAHTVGSFGN
RLPGAGVDVGATGENRCYKCNQSGHWARDCPGPNATPIYGVPGGGGYGVRSNNYGGRY
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaatttgacaagagatgctatcgctatggtgagcgaagggaagcaggacata
aagcctgttcttcaggtttacgacattaaattggttatgtcgcaggctgcaaatgacaga
tacagattgcttctctcagatggcacccacatgcagcaatctatgcttgcttctcaattg
aatcattatgttaagtcgggacagctgcagaagggctctatagttcaaatgatcgagtat
atttgcaatactatacaaaatcgcaagatcattattgtgatcaacctggaagtagtgctc
gataagtttgatataattggtgagccaaaactctatgtgggtgcttctgcaaatggtcca
gctgcaccgcaggttgagtctgttccagcaaaatcttctcctgttctgtcccgaccagca
actggaaatgctcagccttatggtgttccctatgctgctggccatcttggggaagggcca
aatcctgggggatcttctctgcatcccaaagctgaaactggggctagtgttactaacatt
gccaatggcaaaaattatggtatttcatcacatagtaatatggccaaccagaatcagact
tcaaatatgcatgggcgagcaactccacaatcaatatatcagccaactccatcatatgtc
aatagggggcctattgctaaaaatgaagctcctgctcgaattattccaattgctgcgtta
aacccatatcagggaagatggacaattaaagcaagagtcacgtcaaaaagtgagcttagg
cggtacaacaatcccagaggagagggcaaagttttttcttttgatctgttagactctgat
ggtggggaaattcgtgttacttgcttcaatttggtggcagatcagttttatgataggatc
aatgtaggtaatgtatacttgatatccaagggaagtctaaagcctgcgcagaagaacttc
aatcaccttaataatgaatgggaaatacttttggagtcaacttcaacaatagagccatgc
ttggaggaagatagctctatccctaggcagcagtttaattttaggcctatcagtgaaatt
gagagcatggagaacaactcaatggttgatataattggggtagttgtctcagtgcatcct
tcttctaccataatgagaaaaaatggtacagaaacgcagaaaagaactcttcagttgaag
gacatgtcagggcgaagtgttgaattaaccatttggggtaacttttgcaacgtggaagga
caaaggctgcaagaaatgtgtgactccggaatgcgtcccgttttggctgtgaaggctggt
agagtaagtgatttcagtggaaaatcagttgggacgatttctacgagccagctattcatt
gatcctgagtttccagaggctcaacgattaagggagtggttcaatagggagggaaaaaat
gtggctactccatccatttcaagggacaactcaatgtcgggaaaaacagatgttcggaag
actgtgtcacagattaaggatgaaggtcttggtagagcagagaagccagattggatcact
gtgaaagcagttgttgcatttgtaaaggtagataacttttgctatactgcatgccccttg
atggttggtgatcggcagtgcaacaagaaagttactaataatggtgatgggaggtggcac
tgcgacaggtgcgaccaagatatacctgaatgtgactacagatatcttctccagttccag
atacaagatcacactggcatcacatgggtaaccgcatttcaggaggctggggaggaaata
atgggagtctcagctaaagccttgtatatgttgaaacatgaagaacaagatgatgtggag
tttggtaaggttataaaaactgttctcttcaatcaatacctgttcaagcttaaagtgaag
gaggagatttacagtgatgagcaacgggtcaagtccactgtcgtgaaggcagaaagactg
aattttgcagctgaatgcaattgcctttttggtttgattggaaggctctcaagggatgag
ctgcaaactaatcctgcaacaatctcacatggaggaaacagttatgagatgaacagtgca
agtggctaccgaagtgctgtgagtggctatggtggaaattctcttggtggcaacacaggt
agcaacactgatggatacaatgcttcattggcataccaatctggttttatgggtagtgga
caaggtggtggtaggcctctcaactccttttgtaacaaatgtggtggcacagatcacaat
cctatgaactgtccagggctaagagtagccggcgcacatacagtgggaagttttggaaac
aggctgcctggtgctggtgtagatgttggtgctactggggagaaccgatgctacaagtgc
aatcaaagtggacactgggcaagagattgtcctggacccaacgctactcctatctatgga
gtccctggtggtggtggatacggggtgagaagcaataactatggcggccggtattag
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