Nymphaea colorata (blue-petal water lily): 116253720
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Entry
116253720 CDS
T07418
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116253720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116253720
03036 Chromosome and associated proteins [BR:
ncol03036
]
116253720
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116253720
Coactivators
SAGA/TFTC/STAGA complex
116253720
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116253720
STAGA complex
116253720
TFTC complex
116253720
SAGA complex
116253720
SLIK complex
116253720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_NWD2_C
LisH_PAC1
WD40_like
Cytochrom_D1
Beta-prop_VPS8
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
116253720
NCBI-ProteinID:
XP_031484555
LinkDB
All DBs
Position
4:complement(11247680..11291386)
Genome browser
AA seq
661 aa
AA seq
DB search
MEEEEIEKAVIAYLKRKGFRQTELALQEEQSKNLSTTKTDPDIAKQILSFSEVESVPARY
REGYSTLRSWTYNSLDLYKHELLRVLYPVFIHCYMDLVAKGYSQEARNFFNSFREDHELM
HLRDLQKLEGVLSPSHLEENEFARSLRHNKVNIRICQYSYDLLLQYLQKSESMIMLGIIN
ERINFRVSPGQPGSFTDDADVVSLMGSSNDIAKQVNQKEVHWGLLEDSIEEQLEKAGLAT
DVEKTEGESKEGDLEDNKKRSAEGGKSGTLAKKVKKDKIVGATGKSIRSEASTVSVAPRV
KSELALPVRSTEVEQALLEDLRNRAALGSSALPSVSFYTFINTHNSLNCSTISSDGSLVA
GGFSDSSLKVWDISKQGQQVKSYNAEGDVESAHIEASAGLEGKRPYTLFQGHAGPIYSAA
FSPLGDFILTASADSTVRLWSTKLKANLVCYKGHNYPVWDVQFSPVGQYFASSSHDRTAR
IWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRMFIGHRS
MVLSMAMSPDGRYMASGDEDGMIMMWDLSTGRCVTPLMGHSSCVWTLAFSCEGSLLASGS
ADCTVKLWDVTASTKIPKAEEKGNSASRLRSLKTLPTKATPVYALRFSRRNLLFAAGVLS
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaagagatcgagaaggcggtgattgcgtaccttaagaggaagggattccgc
cagacggagcttgcgttacaggaggagcagagcaagaacctttccacaaccaagaccgat
cctgacatcgctaagcagatactctccttctccgaggtagagagtgtcccagctcgatat
cgcgagggatacagcacgctgaggtcgtggacttacaattcgttggacttgtacaagcat
gaattgctgcgtgtgctctatcctgtatttatccattgttacatggatcttgttgcaaaa
gggtatagtcaagaagctcgtaatttcttcaatagtttccgagaagaccatgagttaatg
cacctgagagatttgcagaagttagaaggagttctctctccctcacatctggaggaaaat
gaatttgctcgttcgttgcggcataacaaagtcaatatacgtatttgtcagtattcctat
gatcttctactgcaatacctgcagaaatccgagtcaatgataatgcttggaataataaat
gagcgtatcaatttccgagtttcccctggacagccaggttcttttactgatgatgctgat
gtggtaagtttgatgggcagtagcaatgatatagctaagcaggtgaatcagaaagaagtt
cattgggggttgcttgaagactctatagaggaacaattagaaaaggctggtttggcaact
gatgtggaaaagacagaaggtgaatccaaagaaggagacttagaagataacaagaaaagg
tcagcagaaggagggaagtctggaactttagccaagaaagtaaagaaggataagatcgtt
ggtgcaacaggaaaaagtatccgttctgaagcaagcacagtctctgtagctcctcgggtg
aaatctgaacttgcgttgcctgtgaggtcaacagaggtggagcaggcattgcttgaggac
ctaaggaaccgtgcagcactaggaagctctgcccttccatcagttagtttttatacgttt
ataaacactcataatagtttaaattgttctacaatttcctctgatggatcactagtagct
gggggcttctctgattcatctttgaaggtatgggacatctcaaaacagggtcagcaagta
aaatcgtacaatgcggagggtgatgttgaatctgctcatattgaagcttcagcagggttg
gaagggaaaaggccttacacattattccagggccatgctggacctatctactctgctgca
tttagtcctttgggagatttcattttaactgcttcagcagattctacagttagattgtgg
agcacaaagttgaaagcaaaccttgtttgctacaagggccataactaccctgtttgggat
gtccagttcagccctgtaggacaatattttgccagctcatcgcatgatcgaactgctaga
atttggtcaatggacagaatccaaccactaagaataatggcaggacatttatctgatgtt
gattgtgtccaatggcatgcaaattgtaactacattgcaactggatctagcgataagact
gttagattatgggatgtccaaagtggggaatgtgttcgcatgtttataggtcatcgaagt
atggttttgtctatggcaatgtcccctgatggtcggtacatggcatctggtgatgaggac
gggatgataatgatgtgggatctttctactggtcgttgtgttactccattaatggggcac
agctcttgtgtatggacccttgctttcagttgtgaaggttcccttcttgcctctggctct
gccgattgcactgtgaaactttgggatgtcactgcaagtacaaagattcctaaggctgaa
gaaaaaggcaacagcgcaagcaggttgaggtccttgaagacacttccaaccaaggctact
cctgtttatgctttgcggttctctcgaagaaatcttctgtttgctgcgggagtcctctca
aaatga
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