Nymphaea colorata (blue-petal water lily): 116253843
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Entry
116253843 CDS
T07418
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116253843
09124 Replication and repair
03420 Nucleotide excision repair
116253843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116253843
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116253843
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116253843
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116253843
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
116253843
NCBI-ProteinID:
XP_031484665
LinkDB
All DBs
Position
5:14915268..14923886
Genome browser
AA seq
413 aa
AA seq
DB search
MGERKQEGRRGEDEDEDEEDEGGRRGRRVEAWERSYADERSWEDLQEDESGLLRAVDSKK
QQHDQYRRRLQCISSRIQRGLIRYLFVVVDLSGAAGHTDFWPSRMAVVANGVEAFIREFF
DQNPLSHIGMVTIKDGIAHCLTDLGSSPDSHIKALRAKLGCSGESSLQNALDLVRGYLSQ
IPPYGHREVLILYSALSTCDPGDIMETIQNCKKTKIRCSVIGLSAEIYICKHLCEETGGS
YTVALDESHFKELLLEHAPPPPALAEFAVANLIKMGFPQRGAEGVIAICSCHKEAKIGGG
YTCPRCKARVCDLPIECQICGLTLVSSPHLARSYHHLFPITPFDEVPSSFSNGLVHTLPR
ACFGCQQNFPGPGSKSSGRVACPKCGRHFCFDCDIYIHESLHNCPGCESQRSS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaggaagcaggagggcaggagaggagaagacgaagatgaggatgaagaggac
gagggaggacgtaggggaagaagagtggaggcgtgggagaggtcatacgcggacgagagg
tcctgggaggatctccaggaagacgaatcggggctgttgcgggctgttgacagcaagaag
cagcagcacgaccagtaccggcggcgtctccaatgcatctcgtcccggatccagcgcggg
ctcatccggtaccttttcgtcgtcgtcgacctatccggagcagctggtcacacagatttt
tggccgagtagaatggcagtagttgcaaatggtgttgaggcattcattagagagtttttt
gatcaaaatccacttagtcacattggtatggtgactataaaggatggaattgctcattgt
ttaacagacctagggagcagtccagattcacatataaaggctttgcgtgctaagctggga
tgctcaggtgaatcttctctacaaaatgcactggatcttgttcgtggctatctaagccaa
attccaccatatggccatcgggaagttttaatcctatattctgctctcagtacatgtgat
ccgggagatataatggagacaattcagaattgtaagaaaaccaagataaggtgttcagtg
attgggctatctgcggaaatttatatctgtaaacatctttgtgaggagactggtggctca
tatactgtggcactggatgagtctcacttcaaagaattgttgctcgaacatgcacctcca
cctccagctctagcagaatttgcagttgccaacttgatcaagatgggatttccacagagg
ggagcagagggtgtcattgccatatgctcctgtcacaaggaagctaagattggtggtggt
tacacttgtccaagatgcaaagctcgtgtttgtgaccttcctattgaatgccaaatttgt
ggtctcacccttgtttcttctcctcacctggcaagatcttatcaccatctttttccaatt
acaccctttgatgaagtgccttcttccttttcaaatggcttggtgcatacactaccaaga
gcttgctttggttgtcagcagaattttccaggtccaggaagcaaatcaagtggccgtgtt
gcttgcccaaagtgtgggcgacacttttgctttgactgtgatatttacattcatgagagc
ctgcacaattgtccaggatgtgagagccagcggagttcctga
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