Nymphaea colorata (blue-petal water lily): 116254085
Help
Entry
116254085 CDS
T07418
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116254085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116254085
Enzymes [BR:
ncol01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
116254085
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
116254085
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
116254085
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
116254085
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
116254085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
KTI12
AAA_16
nSTAND3
AAA_17
AAA_22
Zeta_toxin
MMR_HSR1
RNA_helicase
FtsK_SpoIIIE
ATP_bind_1
DUF3795
AAA
RsgA_GTPase
Ploopntkinase3
Motif
Other DBs
NCBI-GeneID:
116254085
NCBI-ProteinID:
XP_031485021
LinkDB
All DBs
Position
5:19226728..19244672
Genome browser
AA seq
779 aa
AA seq
DB search
MAAEQSGVWQGNCEGGKPIVLILVGAPGSGKSTFCNNVMKGALRQWVRVCQDIIANGKAG
TKVQCLKKASDALKERKNVFIDRCNLERGQRAEFIQLGKQQADVHAVVLDLPAQLCIARS
VKRTEHEGGLKGGSAAAVVNRMLQKKEMPKLNEGFSRISFCHTEADVEDSVDTYRKLGPS
DSLTPGCFGQRSSDAKVQVGIMKFLKKLQPSENADVCQVSDFEKDKEAKEGPSGEELKEP
IPSSGLLDTRVKGRHNLSKDVFVADYYTLAFPSISTSDFQFSLEKASEIIVEEVSEFLSK
TENLRLVLVDLTEQSRILAMVNAKAVQRKIDKKRFCTFVGDITRLYSGECLRCNVIANAA
NWRLKPGGGGVNAAIFNAAGEDFERATKSQAQTLNPGNAVAVPLPADSLLFRREGISHVI
HVLGPNMNPNRPNYLGKDYVKGCDVLRRAYSSLFCSFASIAQTAKLPVEHSQKCITGPIG
ENHIQENLNDHSIKDAEQKVKREGLRELDTESNKKCKGESPVLPKGDLSHSSFGCKRYST
GSSVDGPLEDMPARAETNVERKEKSINEYNKSWASWAQCLYHIAMHPDEHREEVIELSES
TVTIYDLYPKAKKHLLIVARLHGLDSLADVCKEHIQLLKEMQSVGLRWVKKFTSEDPSTG
FRLGYHSVPSMRQLHLHVISQDFESTYLKHKKHWNSFNTPFFRDSVDVIEELENHGKVSI
KEESFLSMELRCHRCRSAHPNIPHLKCHIQKCSASFPASLLTHGRLYYTLPQNLGSDGV
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagagcaatccggcgtttggcaaggaaattgtgagggtggcaaacccatcgtc
ctgatcctagtgggagctcccggtagcgggaagtctaccttctgcaataacgtcatgaag
ggtgctttgaggcaatgggttcgcgtctgtcaggacattattgctaatggaaaagctggg
acgaaagtccagtgcttaaaaaaagcatctgatgcattaaaggaaagaaaaaatgtgttt
attgataggtgcaatttagaaagagggcaaagagctgagttcattcagcttggcaagcag
caagcagatgtgcacgcagtagtccttgatcttcctgctcaactgtgcattgcacggtca
gtaaagcgtactgaacatgaaggaggtctgaaaggtggcagtgctgcggcagttgtaaac
cggatgctccagaagaaagagatgccaaaattaaatgaaggattctctcgcattagtttt
tgccataccgaagctgatgttgaagattctgttgatacatataggaaattgggcccatca
gatagccttacacctggatgttttggtcagagaagctctgatgccaaagttcaagttggt
ataatgaagtttctaaagaagttacagccatctgaaaatgccgatgtttgtcaggtttcc
gattttgaaaaagataaagaagcaaaagagggtcccagtggagaagaactgaaagaacct
attccatcctctggccttttggatacacgtgttaaagggagacataatttgtctaaggat
gtctttgttgctgattactatacactagcatttccatcaatatcaacctctgatttccaa
tttagtcttgagaaagcatctgaaattatcgttgaggaggtcagtgaattcttgagcaag
acagagaatttgagattggttctcgttgacttaacagaacagtcaaggattttggctatg
gtcaatgctaaagctgtccagaggaagattgataaaaaaagattctgtacatttgttggt
gacattactcgtctctattctggtgaatgtttaaggtgtaatgtaattgcaaatgctgcc
aactggcgcttgaaacctggtggaggtggggttaatgctgccatatttaatgctgctggt
gaagattttgagcgtgcaaccaagagtcaggctcaaaccctgaatcctgggaatgctgtt
gctgtacctctacctgcagattcccttctctttagaagagaaggcatcagtcatgtcatt
catgtccttgggccaaatatgaacccaaataggccaaactatcttggaaaggactatgtg
aaaggatgtgatgttcttcgaagagcttactcatctcttttttgttcttttgcatctatt
gctcagactgctaagttaccagtggagcacagtcagaaatgtatcacaggaccaatagga
gaaaaccatattcaggaaaatctcaatgatcactccataaaggatgcagaacagaaagtc
aaaagggagggactaagagaactagatactgaaagtaacaagaagtgcaaaggagagtct
cctgtacttcctaaaggtgacttgtcccatagttcttttggttgcaaacgttatagcact
ggttcttctgtagatggaccacttgaggatatgcctgcacgtgcagagacaaatgttgaa
aggaaggaaaagagcattaatgagtataacaagtcatgggcttcatgggcacaatgccta
tatcacattgctatgcatcctgatgagcacagagaggaagttattgaactatcggagtcc
actgtcacgatttacgatctataccctaaggcaaaaaagcacttgctgatagttgctaga
ctgcatggactggatagccttgctgatgtgtgcaaagagcacattcaattgttaaaagaa
atgcaatccgtggggctgaggtgggtgaagaaatttacatctgaagatccatcaactggg
ttcaggcttggatatcattcggtcccttcgatgcgtcagctgcatcttcatgtcatcagc
caggactttgagtctacatatttaaaacacaagaagcattggaactccttcaacactccg
ttcttccgtgactcggttgatgtgattgaggaattagaaaaccatggtaaggtcagcatc
aaggaagagagcttcttatctatggaattacgttgtcacaggtgccgaagtgcacatcct
aatatcccccatctcaagtgccatatccaaaagtgcagtgcatccttccctgcaagtctg
ttaactcatgggcgactatactatacgcttccccaaaatttaggaagtgatggagtatga
DBGET
integrated database retrieval system
