Nymphaea colorata (blue-petal water lily): 116254089
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Entry
116254089 CDS
T07418
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X2
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116254089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116254089
04121 Ubiquitin system [BR:
ncol04121
]
116254089
03036 Chromosome and associated proteins [BR:
ncol03036
]
116254089
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116254089
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116254089
Ubiquitin system [BR:
ncol04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
116254089
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116254089
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116254089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-RING_UBOX
zf-RING_6
zf-C3HC4_4
zf-C3HC4
BRCT_2
zf-C3HC4_2
zf-RING_2
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_5
PHD_NSD
Prok-RING_4
zf-RING_10
zf-Nse
PTCB-BRCT
U-box
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
116254089
NCBI-ProteinID:
XP_031485027
LinkDB
All DBs
Position
5:24752202..24761529
Genome browser
AA seq
779 aa
AA seq
DB search
MAEAAGLREVLNPCLFHLQKMEVELKCPICLNLLRQPVSLPCSHIFCSSCIMNPSKSRSD
CPVCKQRYSWQDVRLSPHMEQMGHIYRGMRTAFGVALLHSNSRNNHSDVLATGCGDSDLL
KETCNVSPKYDSRYSQHIDNQFVTKPASYLFPSKKRVQVSPSDIETGMGTYDEYKKLLNY
EEKSNGVARQNCMNIIERNIEPGLHGGSLIEAEEEITKLNEKSRSSADINLRLHSIDFQV
NGNYLMGNGKESGKRLAENVGIDRVSKKQNRSYIEHENSVMRIGHDGPVNDAREAIMDLN
SYCLAPNNAVSFNASPQLQTSSDVNVDRAENGTNSTISSDQCLESEPVATDAHMEIGHSE
GMFHACAVSSPDEVRSVLNNVICAFCQSSGESEASGPLVHYLKGKVVAVSQRNQPDIVHA
HTKCVEWAPNAYYDDDEIIQNLESEVARSVKIKCSKCGQKGAALGCYAKTCRRSYHVPCA
ADTPNCRWDDDDYLMFCPVHSSLRFPSERKSGRPTRMPVEPSNACSKTNQQDSRKWMALS
GTSDRWMLCGSALTTAEKDIVTEFSSLTGATLSKSWDSNITHVIASVDENGCCRRTLKVL
MAILNGRWIVNINWIKACREAMHPVSEEPYEVHHDIHGCSGGPRNGRLRAAAKEPPLFSG
LNFFFIGEFEAPYRGYLQDLVLAAGGSVLRTLPSLEIEAQACSPPSIILVYHVARGDGVT
SPDGVSVMEQAIAEATSLAATIGARVAGHEWLLDSVAACSLQPLSSAGAAYVGDAVIPT
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcagccggtctcagggaagtgcttaacccttgcttatttcacctccagaag
atggaggtcgaactaaaatgcccgatctgcttgaacttgctgaggcaacctgtgtctctt
ccttgtagccatatattttgcagttcctgtattatgaatccatcgaaatcaagatctgat
tgccctgtttgcaaacaacgatattcctggcaagatgtgcgtttatccccacatatggag
caaatgggacacatatacaggggaatgcgtactgcatttggtgtagctcttcttcactca
aactcgaggaataatcattctgatgttctggcaactggctgtggagacagtgatctactt
aaggaaacttgcaatgtatcacccaagtacgattcaagatactctcaacacattgataat
caatttgtcacaaagcctgcaagttatttattcccatccaagaaaagggttcaggtgtct
ccatctgacattgagactgggatgggtacatatgatgagtataagaaattactaaattat
gaagagaagagcaatggagttgcgaggcagaattgcatgaacattattgaaagaaacatt
gaacctgggctgcatggaggtagcttgatcgaagcagaggaagaaatcacaaagttgaac
gagaaaagcagatccagtgctgatattaacttgcgtcttcattccatagatttccaagtt
aatggaaattatttaatggggaatgggaaggagagtggcaagcggctggcagagaatgtt
ggaattgatagagtatccaagaagcagaacagatcatatattgaacatgaaaactcggtt
atgagaattggacatgatggtccagtaaatgatgcaagagaagcaataatggatttgaac
tcttattgccttgctcctaacaatgctgtttcattcaatgcttcccctcaacttcagaca
agttcagatgtcaacgttgatagagccgagaatggaacaaatagtacaatttcaagtgat
cagtgcctggaaagtgaaccagttgccactgatgcacatatggaaattggtcactctgaa
ggcatgtttcatgcttgtgctgtatcaagtcctgatgaggttcggtcagtgctgaataat
gtaatatgtgcattttgtcaatcttctggggaatcagaggcttcaggcccacttgtgcat
tacctgaaaggcaaagtggtagctgtgtcacaaaggaaccaacccgacatagtgcatgct
cacacaaagtgtgttgagtgggcacctaatgcatattatgatgatgatgagatcatacaa
aatttggaatctgaagttgcaaggagtgtaaagataaaatgcagcaagtgtggacaaaag
ggggcagctcttggctgctatgcgaagacttgtcgacgaagctaccatgttccatgtgca
gcagatacccctaattgtcggtgggatgatgatgattatttaatgttttgtcctgttcat
tcttcgctaagatttccaagtgaaaggaagtctggaaggccaaccagaatgccagttgaa
ccttcaaatgcctgttctaaaacaaaccagcaggacagcagaaaatggatggccctctct
ggcacatcagacagatggatgctctgtggatctgccttgaccacggcagagaaggatatt
gttacagagttttcaagtttgactggtgcaacactctccaagtcatgggactcaaatatt
acgcatgtaattgcatctgtcgatgaaaatggctgctgtagaaggaccttgaaagtactg
atggcgatattgaatgggagatggatagtgaacatcaattggatcaaagcctgcagagaa
gccatgcatccagttagcgaggagccttatgaagtacatcacgatattcatggatgttct
ggaggtccaagaaacggaaggcttagagcagcggctaaggagcctccacttttcagcggg
ctaaatttcttcttcatcggcgagttcgaggccccatacaggggttatctacaagacctc
gtgctggcagccggcggcagcgtcctgcgaactctgccttctttggaaatcgaagctcag
gcatgcagcccaccatcaatcatcctggtgtaccatgtggctcgcggcgacggagtcaca
tctcccgatggtgtttctgtgatggagcaagccatagcagaggccacctccttggctgca
acaatcggcgcaagagtcgccggccacgagtggctcttggactccgtagctgcctgcagt
ctgcagcctctttcctccgctggtgctgcttacgttggagatgcagtcatccccacctag
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