Nymphaea colorata (blue-petal water lily): 116254123
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Entry
116254123 CDS
T07418
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116254123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116254123
03009 Ribosome biogenesis [BR:
ncol03009
]
116254123
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116254123
Spliceosome [BR:
ncol03041
]
Complex A
U1 snRNP components
U1 related factors
116254123
Complex B
116254123
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
Pre-60S particles
Helicases
116254123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
116254123
NCBI-ProteinID:
XP_031485101
LinkDB
All DBs
Position
5:14552301..14585139
Genome browser
AA seq
1069 aa
AA seq
DB search
MDSSGPRYAPDDPALPKPWRGLIDGSTGYLYYWNPETNVTQYTRPMPLLTVLPVGPPPRS
CPSLAPIPSAQKHDFSSSVDSQTGVSSSYIQQVAPTLSQFHQAMATSNQAQQLGISLHQV
PHTVQRPQVPQTGQLVDQVEQTDPGFSQVQQVVTGLSQLPQSESVLSQVNEEGHISFQAP
PSRIHLIPQQKGGTLSDIEQTADSLSQVQKREAPSQSQRVAPNCSQAHLGAPPFAPVHQP
DMFAYQIQQSGALFHDGHQTRNNSIQVQQMGANNVQERQSSLPSPQAPSGGNSSIQIHQF
GPAPMPLQTGIASHPMYDGIDPSSCRTLSLGSAPVVNSHQCVGSSVAACKNHEDDQNGRP
CGKSLLHYNNEDNTKITPQHHELRTDGMLPQNTSAANIVAGSPIVDMYNYCSSGQSYSSG
PISKPLGIHGPADLNKFMSVEAYRRHHEVTAVGENVPAPFITFEATGFPSEILREMHSAG
FASPTPIQAQTWPVALQGRDIVAIARTGSGKTLGYLIPAFIHLRQCRNNPQIGPTVLVLA
PTRELATQIQDEAIKFGQSSRISCTCLYGGAPKGPQLRELERGADIVVATPGRLNDIFDM
KKINFSQVSFLVLDEADRMLDMGFEPQIRKIVDEIPCRRQTLMYTATWPKDVRKIAGDLL
LNPIQVNIGNVDELEANKAITQLVEVVSQPDKQQRLEQILRSQEQGSKVIVFCSTKRLCD
QLVRSIRRNFRAAAIHGDKSQGERDWVLNEFRTGRSPILIATNVAARGLDIKDIRVVINY
DFPTGIEDYVHRIGRTGRAGATGISITFFSNQDWKYAADLIKVLEGANQRVPPEVREIAT
RYENSVKGGRGGGFTRWDSGSRGIHDGADIHIRGPGHRGGKTAPGGGRGDLFNGHGGGYN
NKFSGDYSGGHGGAFGGCRNRGRGIGGVPGGRYTGAPHSRLTAIGGQGKFDGQRAGGGRT
KFNSHKSSPDKVRTWGYSRSRWRSRSLSSCSRSRSRSPSRSRSRSPSRSRSRSYDRFSRG
DGSPARVRSPLLEPLPCLTHTPRGDLVPPILVQAEPGQMPAGSSHEVLT
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcaggtccacgatatgcgcctgatgatcctgcacttcccaagccttggaga
ggtcttattgatgggagtactggttatctttattactggaatcctgagactaatgttaca
cagtacacaaggcctatgccactcttgacggtccttcctgtgggtcctcctccgaggtcg
tgtccgagtttggctcctattccatctgcccagaaacatgatttttcttcctcagtggat
tctcaaacaggggtttcttcatcctatatccagcaagtggcccccacattatctcagttt
catcaagcaatggcaacttcaaatcaggcacaacaattgggtatttctttgcatcaggtt
ccacatacagtgcaacgtcctcaagttccacaaacaggtcaactagtagatcaggtggaa
caaacagatcctggattttcacaggtccagcaagtggtgactggtttatcccagcttcca
caatcagaatcagttttgagtcaggttaatgaggaaggacatatttcatttcaggctcca
ccatccaggattcacttaattccccaacaaaaagggggaacattatcagatatcgagcaa
actgctgattctttatctcaggtccaaaaaagagaggcaccatctcaatcacaacgagta
gcaccaaactgctctcaggctcatctaggagcccctccttttgcaccggtgcaccagcct
gacatgtttgcgtatcaaatccaacagtcaggggcattatttcatgatggtcatcaaaca
agaaacaattccatccaagtacaacaaatgggagctaataatgttcaggaacgccaaagc
agtcttccttctcctcaagcaccatcaggtggaaattcctctattcagatacaccagttt
gggccagcccctatgccattgcaaactggaattgcgtctcatcccatgtatgatggaatt
gatccctctagctgtagaactctatctttaggatcagctccggttgtcaatagccaccag
tgtgttggatcgtcagtagcagcttgtaagaatcatgaagatgatcaaaatggaaggcct
tgtggaaaatcacttttgcattataacaatgaagataacacaaagatcacaccacagcac
catgaactgagaacagatggtatgcttccgcagaatacatctgcagctaacatagtagct
ggatctccaattgttgacatgtataattactgttcttctggacaatcatattctagtggg
cccatcagcaaacctttggggattcatggccctgctgatctgaataaattcatgtctgtt
gaagcatatagacgacatcatgaagtcactgccgtgggagagaatgttccggctccattc
ataacctttgaagcaactggttttccttctgagatacttagagagatgcactctgctggc
tttgcttccccgacacctatacaggcacaaacttggcctgttgctctgcagggtagagat
attgttgctatagctagaacaggttccgggaagaccttgggctatctcattcctgcattt
attcatctgaggcagtgtagaaataatcctcagattggcccaactgtgctggttttggcc
ccaacacgggaacttgctacacaaatacaagacgaggccataaagtttgggcagtcatca
aggatttcttgcacgtgtttatatgggggagctccaaagggtcctcagctgagagaactt
gaacggggagctgatatagtagtagcaactcctggacgactcaatgacatttttgacatg
aagaagattaacttctctcaagtatcctttcttgttcttgatgaagcagatcgaatgctt
gacatgggatttgaaccccaaattcgtaaaattgtcgatgagatcccatgccgcaggcaa
acacttatgtatacagcaacctggccaaaggatgtgaggaagattgctggtgacttgctt
ctgaacccaattcaggtgaacattggtaatgtggatgaacttgaggccaacaaagcaatt
acacagttagttgaggtagtttcccaaccagacaagcagcaacgtctggagcagattctt
cgatctcaagaacagggatccaaggttatcgtcttctgttcaacgaagaggttatgcgat
cagcttgttcgtagcattagacgaaacttccgtgcagctgccattcatggagacaagtct
caaggtgagagagactgggtgctgaatgagttccgcactggcagatctccaatactaatt
gccactaatgtcgctgctagaggacttgatatcaaggatataagggtggtgattaattat
gattttcctaccggtatcgaggattatgtccatcgaattggccgaactggaagggctggt
gctactggtatatcaattaccttcttttctaaccaagattggaagtacgctgcagatttg
atcaaagtccttgaaggagctaaccaaagggtgcctccagaagtaagggagatagctaca
cgttatgaaaattctgtaaaaggtggacgtggtggaggcttcacaagatgggattctgga
agccgaggaatccatgatggtgcagacattcatattcgtggcccgggccatcgtggtggc
aaaactgctcctggtggtggtcgtggtgaccttttcaatggccatggtggagggtacaac
aataagttttctggtgattatagtggtggccatggtggtgcctttggtggttgtcgaaat
cgagggcgaggaattggtggggttcctggtggtcggtatactggggcccctcacagccgt
cttactgctattggcgggcaaggaaaatttgatggtcaaagggctggtggcggacgaact
aaattcaacagtcacaagtcaagtccagacaaggtgcggacttggggttacagtaggagt
cgatggcgtagtaggagtttgagtagttgcagcagaagcaggagccgcagccccagtaga
agcaggagccgcagccccagcagaagcaggagccggagctatgaccgtttctcaagaggg
gatggctcaccagcaagagtgaggtctccactgctggaaccattgccttgcttgacccat
actccaaggggtgacttggtccctcctatattagtgcaagcagaaccggggcagatgcct
gctggaagttctcatgaagttctaacctaa
DBGET
integrated database retrieval system
