Nymphaea colorata (blue-petal water lily): 116254201
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Entry
116254201 CDS
T07418
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116254201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116254201
03041 Spliceosome [BR:
ncol03041
]
116254201
03036 Chromosome and associated proteins [BR:
ncol03036
]
116254201
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116254201
Spliceosome [BR:
ncol03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116254201
Complex B
116254201
Complex C
U2 SnRNP specific factors
116254201
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116254201
TFTC complex
116254201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
116254201
NCBI-ProteinID:
XP_031485260
LinkDB
All DBs
Position
5:4330700..4338132
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYSLTLQRATGVVCATHGSFVGGKTQEIVVARGKVLDLLRPDDTGKLQTILSVEVFGA
VRSLAQFRLTGSQKDYVVVGSDSGRIVILEYNKERNAFDKVHQETFGKSGCRRIVPGQFL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVYSIAAVDCGFDNPV
FAAIELDYSEADQDPSGQAANDAQKHLTFYELDLGLNHVSRKWSEPIDNGANLLVTVPGG
GEGPGGILVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLVVSVATHRQKTIFFFLLQ
TEYGDIFKVTLVHQNDQVSELKIKYFDTIPVTTSMCLLRSGFLFAASEFGNHALYQFKAI
GEDPDVESSSATLMETEEGFQPVFFQPRGLKNLGQIDQVESLMPIMDMKVINLFEEETPQ
IFALCGRGPRSSMRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLLGDDSLMQVHPNGIRHIREDGRINEWKTPGKK
TIVKVGSNRLQVVIALSGGELIYFEMDLTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSAPESLLLLEVQASVGGEDGADRPASVFL
NAGLQNGVLFRTVVDMVTGQLSDTRSRFLGLRAPKLFSAMVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RKFVLHPKKKLLVMIESDQGAFAAEEREAARKECLEAMGEGNGNANTEQMENGDDEEKED
PLPDEQYGYPKAESGKWASCIRVLEPKSGNTTCLLELQDNEAAFSVCTVNFHDKEYGTLL
AVGTAKGLQFCPKKNFMAGFIHIYRFLDDGKSLELLHKTPVDGIPLALCQFQGRLLAGIG
PVLRVYDLGKRKLLRKCENKLFPNTIISINTYRDRIYVGDIQESFHYVKYRRDENQLYIF
ADDSVPRWLTASHHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVTCLQKASLIPGGGECIIYGTVMGSLGAFLPFTSREDVDFFSHL
EMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPALAPDLQRKIADELDRTPGEI
LKKLEDIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcctgacgctgcagagggcgacgggcgttgtctgcgcgacgcacggc
agcttcgtcggtgggaagacgcaggaaatcgtggtggcgaggggaaaggtcctcgacctc
cttcgccctgatgataccggaaagctccagaccatcctctctgtcgaggtctttggcgcc
gttcgctccctcgcacagtttcgcctcaccgggtcccagaaggactacgttgttgttggc
tcggattccggccgcatcgtcattctcgagtataacaaggaaaggaacgccttcgacaag
gtccaccaggagaccttcggaaagtccggctgccggcgcatcgtccccggccagttcctc
gccgtcgatcccaaagggcgtgccgtcatgatcggcgcctgcgagaagcagaagcttgtc
tacgttctcaaccgtgatactgccgcccgcctcaccatctcctcccctcttgaggcccac
aagtctcacacgctcgtctactcgatcgccgccgtcgattgtggcttcgataatccggtt
ttcgccgcgattgagctcgattactccgaggcggatcaggatccgtccggtcaggctgcc
aacgacgcccagaagcacctcactttctacgagctcgacctcggcttgaaccacgtctcc
cggaagtggtctgagcccatcgacaatggcgccaatttgcttgtcactgtccccggaggc
ggcgagggccccggtggaatactcgtttgtgcggagaacttcgttatctacaagaaccag
ggacacccggacgttcgtgcggttattccccggcgggcagatctcccggccgagcgcggt
gtcctggttgtttccgtggccacccacaggcagaagaccatcttcttcttcctactacag
accgagtatggggacatcttcaaggttaccctggtgcaccagaacgaccaggtgagcgag
ctcaagattaagtatttcgacacaatcccggtgacgacgtcgatgtgcctgctgcgctct
gggttccttttcgcggcctccgagtttggtaaccatgctctctatcaatttaaggcaatt
ggggaggaccctgatgtggagtcgtcgtcagctacgcttatggagacagaagaagggttc
cagcccgtgttcttccagccgaggggccttaagaacctggggcagatcgaccaggtggag
agcttgatgcccatcatggatatgaaagtcatcaatctgtttgaagaggagacgcctcaa
atttttgcactctgtggtcgggggcctcgctcttcgatgcgaattctccgacctggactt
gctatcagtgagatggctgtttcacagttgcctggtgttcccagtgccgtgtggacagtg
aagaagaatgtgaacgatgagtttgatgcctacattgtggtctccttcgcaaatgctact
ctggttctttctattggagagactgtggaggaagttagcgacagcgggtttctagatacg
acaccttctttggcggtctcgttgctgggagatgattctcttatgcaggttcatccgaat
ggaatcaggcatatcagggaggacgggaggattaacgagtggaagactccaggaaaaaaa
acaattgtgaaggttggatcgaaccggttgcaggtggtaatcgcactgagtggtggggaa
ctcatatatttcgagatggatctcactggtcagttgatggaggtcgagaagcacgaaatg
tcaggtgatgttgcttgcttggacatcgcaccagtaccggaagggaggcagaggtcaagg
tttcttgcagttggatcgtatgacaacacaattcggattctttcacttgaccccgatgac
tgtatgcaggttctgagtgttcagagcgtttcatctgcgccagagtcgcttctgttgctt
gaggttcaggcctctgttggtggagaggatggtgctgatcgtccggccagtgtgtttctg
aatgcagggttgcagaatggggtcctttttaggacagtggttgatatggtaactgggcaa
ttgtctgatacaagatctcggttcttggggttgcgagcaccaaagcttttttcagcaatg
gtgagagggagaagggcgatgctctgcctttcaagtaggccgtggctgggatacattcac
cagggtcacttcttactgactcctctttcttacgagactcttgagtatgcagcttccttt
tcatcagatcaatgtgctgagggtgtggtggctgtggctggagatgcattgagagtgttc
actattgagaggttgggggagacattcaacgagacggcaattcctttgagatatacacca
aggaaatttgttcttcatccaaaaaagaaactcttggtgatgattgagagcgaccaggga
gcttttgctgctgaggagcgggaagctgctcgcaaagaatgcttggaggcaatgggagag
ggtaatggaaatgctaacactgagcaaatggagaatggtgacgatgaggaaaaggaggat
cctcttcctgatgagcagtatggttatcctaaagcagagtcaggtaagtgggcatcatgc
atcagggttctcgagccaaagagtggcaatacaacctgtctgttggagctccaggataat
gaagctgcatttagcgtttgtactgtgaattttcatgataaggaatacggcacgctattg
gctgttgggacagcgaaaggtttgcagttttgtcccaaaaagaattttatggcaggattc
attcacatttataggttcttggacgatggaaaatcacttgaactgttacataagacgcct
gtggatggaattcctcttgccttgtgccagtttcaaggtcgtttactagctggtattggg
cctgtgctcagagtctatgacttgggaaagaggaagctgctaaggaagtgtgagaataag
ctattccctaatacaattatctcaattaacacatacagagatcggatttatgttggtgac
atccaagagtcattccattatgtgaaatatagaagggatgagaatcagctgtatatattt
gcagatgactcagttccacggtggttgactgcatcccaccatgtagattttgacactatg
gctggtgctgacaaatttggaaatatatactttgtaagattgcctcaagatgtgtccgat
gagattgaggaagaccctactggtggtaagattaagtgggagcagggcaagttgaatggg
gctcccaacaaggttgaagaaattgttcagttccatgttggggatgttgtcacgtgcttg
cagaaggcatcgctcatacctggtggtggcgagtgcattatatatggcaccgtgatgggt
agcctaggggcttttcttccattcacgtcaagggaggatgtagacttcttctctcacttg
gagatgcacatgaggcaggagcacccaccactttgcggtcgagatcacatggcctacaga
tctgcctatttccctgtcaaggatgtgattgatggggatctatgtgaacaatttccagca
ttagctcctgatttgcagaggaagatagcagacgagttggatagaactccgggagagatt
ctaaaaaaattggaagatattagaaataaaattatttga
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integrated database retrieval system
