Nymphaea colorata (blue-petal water lily): 116254296
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Entry
116254296 CDS
T07418
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
KO
K11600
exosome complex component RRP41
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116254296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116254296
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116254296
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116254296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116254296
NCBI-ProteinID:
XP_031485460
LinkDB
All DBs
Position
5:18564150..18576517
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AA seq
298 aa
AA seq
DB search
MRDCVRKGKGKIGGCPQYPSRIFLQPTKRRGKPRPPPPLDTRFLRSLFHPLLSCCEDMEY
VSPEGLRLDGRRAMEMRQLRAEMGVVAKADGSAAFEMGNTKVIAAVYGPREVQNKSQQVN
DQALVRCEYSMANFSTGDRNRRPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQV
LQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYIEDSAGGPDVTV
GVLAKLEKVTLLQMDSKLPMDIFEDVMELAIAGCKAVAKYIREVLLENTKQLELRRGI
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgagagattgtgtaaggaaaggaaagggcaaaatcggtggctgcccacaatacccttca
cgtatttttcttcaaccaacaaaacgaagaggaaagccgaggcctcctccaccgctggac
acccgtttcctgagaagtctttttcatcctttactatcttgctgtgaagacatggaatat
gttagtccagagggtctgcgtttggatggtcggcgtgcaatggagatgaggcagcttcgt
gcagagatgggtgttgtagcaaaggcagatggctctgctgcttttgagatgggaaacaca
aaagtaatagcagctgtttatgggccaagagaggttcaaaataaaagccagcaagtcaat
gaccaggcattggttcgctgtgagtacagcatggctaattttagcactggtgatcgcaac
aggagaccaaaaggggacaggcgttcaacagaaatttctttggtcatccgtcagactatg
gaagaatgcatactaacacatttaatgcctcgttctcagattgacatatttgtacaagtt
cttcaagctgatggaggaaccaggtctgcatgtatcaatgctgcaacattggcactcgca
gatgcagggatcccaatgcgtgatttagttacttcatgcagcgctgggtatcttaacagc
actcctttgcttgacttgaactatatcgaggatagtgctggaggccctgatgtgaccgtt
ggagtactagcgaagcttgagaaagtcacacttctccagatggactcgaaattacctatg
gacatattcgaggatgtcatggaactagcaattgctggctgcaaggctgtggctaagtat
ataagggaagtgctgctggagaacactaaacagttggaactaaggaggggcatatag
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