Nymphaea colorata (blue-petal water lily): 116254844
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Entry
116254844 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116254844
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116254844
03015 mRNA surveillance pathway
116254844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116254844
03041 Spliceosome [BR:
ncol03041
]
116254844
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116254844
Spliceosome [BR:
ncol03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116254844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
116254844
NCBI-ProteinID:
XP_031486310
LinkDB
All DBs
Position
5:1820206..1825508
Genome browser
AA seq
814 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAAELEHQVDMTKVKVDVIRPWIANRVTELL
GFEDEVLINFIFGLLEGKNVDGKQVQIQLTGFMEKNTGKFMKELWSLLLSAQKNISGVPQ
QFLDAKEEETKKKKAEADRINLEIQKRKEKDNREMEQGHKKELDGETDDSRAAFRASDAT
SMHLLTNSSLEDSKVGAHKLQGRERIASSPHGLDQSPTHHRKSSHSPRPRSKSFLNNRSP
SRSGSSSERSRLESVSRSPRRRRRSRSVDRRSFSPVHSPHGKHSSRYARSPPRRRPHYPR
RRSPSPLPVRRRSQTPIERRSSSPLRRKSPSLLKRRSRSPRYRSPSPVRRRFSPARSPPH
RRSPSPSRRRLPLLQSPKYRRSPVRSPRRRHVEVSPVRRNRSRSPYRSHSPPYRSRRSLS
RERVAHANGSDPRRYRNEEKSHRAYGRRSPDAHAIERSESKRSGGGYERHGPSVRPLSIN
LRSPQRDVKLPPDSSHKISTLSPSEEPVRSQLDSPVYDRNKNMNQRSDMVQGDSSRMLHK
EQRVRQDSPETSTDEDGVPYQKSPSQKPVQQPARMLEEIEYGPGRLGNTVSHNHALVRQS
SSRRYARDNSSPEERLDDAHATPNKFDTKDKNDRKMSRSPADDDFGMEYEKEHTKRSTKI
VEHADRIGRYESDAEESADSRYRNLGSKKKKREGDERSPRDDDDNSQSDERKQAKRRRKE
EKRLRKEERRRRREERHRRREERHAAKMKSKSGVAISVDIRENDRGADQLDSDDAHENSH
QSDAEEAESEQKRLEIELRKKALESLRAKKAVVH
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggtttctttcgaggcacgtcggctgatcaagacactcgtttctcgaacaag
caagcgaagctactcaagtcccagaaattcgcagcagagttggagcatcaggttgatatg
acgaaagtgaaggtggatgttattaggccatggattgcgaatcgagtgactgagcttctc
ggtttcgaagatgaagttcttatcaatttcatatttggactgctagaaggaaaaaatgtg
gatgggaagcaagtccaaatacaattgactgggttcatggagaaaaatacggggaagttc
atgaaggagctatggagtttattgcttagtgcacagaagaacattagtggagtacctcag
caatttttagatgccaaggaagaagagacgaagaagaaaaaggctgaggctgatcgtatt
aacctggaaattcagaaaaggaaggagaaggataatagggaaatggagcaaggccataag
aaggaactggatggtgagactgatgactcgagagctgctttccgtgcttctgatgctacc
tcaatgcatttgttgaccaactctagcctagaagacagcaaagtaggggcacataaattg
caaggaagagaaaggattgcaagttccccacatggtttggaccagtcgcccacacatcac
agaaaatcttcacattcccctcggccgaggagcaagtccttcttaaataacaggagcccc
tcaaggtctggctcttctagtgaaagatctagattggaaagtgtgtcaagatctcctaga
cgtcgaaggcgctcccgttctgttgataggcgctctttttctccagtacattctccacac
ggtaagcattcatcacgttatgctaggtcaccgcctagacgcagaccacattatccaagg
cggcgatcaccctcaccattgccagtaagacgtaggtctcaaactcctattgagcgtaga
tcctcttctcctctacgccgcaaatcgccatcccttctgaagagaaggtctcgatcacca
agatataggtctccttcacctgtgcgaaggagattttctccagcacgttctccacctcat
cgcagatctccttctccttctagaaggagattgcctttgcttcaatccccaaaataccgc
cgatctcctgttcggtcaccaagaagacgccatgtggaggtttctcctgttcgaagaaat
cggagtcggagtccatacagaagtcacagtcctccatatagaagtcgtaggagcttgagt
agagagcgtgttgctcatgcaaatggttcagatccaagaagatatagaaacgaagaaaag
agtcatagggcatatggaagaaggtccccagatgcacatgctattgagagaagtgagagt
aaacgctctggtggaggatacgagcgtcatggtccttcagtgcggccactatctattaat
ttgaggtcaccacaacgtgacgtaaagttgccacctgattcctctcataaaatctccaca
ttgtcaccttcagaagagccagttcgcagtcagttggactcacctgtgtatgacaggaac
aaaaatatgaaccagaggagtgatatggttcaaggtgacagctctagaatgcttcataag
gaacaaagggttcgccaagacagtccagagacaagtacagatgaggatggtgttccttac
cagaaaagtccctcacagaagccggtgcagcaacctgcacgcatgcttgaagaaattgag
tatggccctggtcggctagggaacactgtttctcataatcatgcactggtgaggcagtca
tcttcaagacgatatgctagagataattcgtctccagaagaaaggcttgatgatgcacat
gccactccaaataaatttgacacaaaagacaagaacgacagaaagatgagccgatcacct
gcagatgatgattttggcatggagtacgaaaaagagcacaccaaacgatccacaaagata
gtggaacacgctgataggattggcagatatgagtcagacgctgaggaaagtgcagattct
aggtatcgtaatttgggcagcaaaaaaaagaagagggaaggagatgaaagatcacctcgt
gatgatgatgacaattcacaaagtgatgagaggaagcaagcaaaaagaagaaggaaggaa
gaaaaaaggttgcggaaggaggagagaaggcgcagacgggaagagcggcataggaggagg
gaagagcgacatgcagcaaagatgaaatccaaatctggtgttgctatttccgttgacatt
cgggaaaatgacagaggtgctgatcagttggacagtgatgatgcgcatgaaaattcccat
caaagtgatgcagaggaagctgaatcagagcaaaaaaggttggagattgagcttcggaaa
aaggctcttgaatcattgcgagcaaagaaggctgttgttcattaa
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