Nymphaea colorata (blue-petal water lily): 116255075
Help
Entry
116255075 CDS
T07418
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116255075
09122 Translation
03013 Nucleocytoplasmic transport
116255075
03015 mRNA surveillance pathway
116255075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116255075
03041 Spliceosome [BR:
ncol03041
]
116255075
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116255075
TREX complex
116255075
Spliceosome [BR:
ncol03041
]
Complex C
Other components
EJC/TREX
116255075
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116255075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
Btz
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116255075
NCBI-ProteinID:
XP_031486680
LinkDB
All DBs
Position
5:393767..396252
Genome browser
AA seq
252 aa
AA seq
DB search
MSNALDMTLDDLIKGNKKPAAGAGGGGSRGRGRGGAASASGAGPARRFPNRVANRSNPYG
KPMQKAPETAWQHDMFMNQAAAAYPGQPARSIETGTMLYISNLDYGVSNEDIKELFSEVG
DLKRFSVHYDRSGRSKGTAEVVFTRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNLSTPAS
IPQVTNGLLGNPNGIPRSNQGRGAAVTRTRGGGGGRGSGRGRGRGKGHSERISAEDLDAD
LDKYHSEAMQIN
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgctctggatatgaccctcgacgacctcatcaagggcaacaagaagcctgcc
gccggcgcgggcggtggcggatccaggggaagaggtcggggtggcgccgcctccgcatcc
ggcgccggccccgcccgccgattccccaatcgcgtcgcgaatcgctcgaacccttacgga
aagccgatgcagaaggcgcctgagacagcgtggcaacatgatatgttcatgaatcaggcg
gcggcagcatatcccggtcagccggcgcggtcgatcgagacgggaacgatgctttacatt
tccaacttggactatggcgtctcaaatgaagatattaaggaacttttctcagaggtgggt
gatctgaagcgattctctgtccactatgataggagtggtagatccaagggcacagcagaa
gttgtttttacacgaagatccgatgctgcggcagctgttaaacggtacaacaatgtgcag
cttgatgggaagccgatgaaaattgagattgttggaaccaatctgtcaacccctgcttca
ataccacaggtcacgaatggtttactcggcaatcctaatggcattcccagaagcaaccaa
ggaagaggagctgctgtaactcgcacgcgaggtggtggtggaggccgtggatcaggtaga
ggccgaggaagaggcaaaggacatagtgaaaggatcagcgctgaagatcttgatgccgac
ctagataaatatcattcagaggccatgcagataaattga
DBGET
integrated database retrieval system
