Nymphaea colorata (blue-petal water lily): 116255100
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Entry
116255100 CDS
T07418
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1 isoform X1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116255100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncol03009
]
116255100
03016 Transfer RNA biogenesis [BR:
ncol03016
]
116255100
03029 Mitochondrial biogenesis [BR:
ncol03029
]
116255100
Enzymes [BR:
ncol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
116255100
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
116255100
Transfer RNA biogenesis [BR:
ncol03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
116255100
Mitochondrial biogenesis [BR:
ncol03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
116255100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
DUF249
Motif
Other DBs
NCBI-GeneID:
116255100
NCBI-ProteinID:
XP_031486710
LinkDB
All DBs
Position
5:5579737..5588202
Genome browser
AA seq
657 aa
AA seq
DB search
MVYFDLNIPYVEGGGGRVGGGGGKDKQKSIRVKLVVMAMELGYTGIAYNYNIHGVMADCH
RCSISPLPLSSLLQLAPSISSVVQFHRKILKVPLDSPFRQYTRLTVTVNSMIQAASLNSG
NPVLQTYDLVAVRPTNQATFEHACQKAHVDLIAIDFSEKLQFRLKSQMVKAAIQRGLYFE
LIYSPLLSDTIAKSELINGAKLLVGWTGGKNIILSSSASTVNELRGPYDVANLSTLLGLS
MQHAKAAMSRNCRSLMTNVIRKKRFYKEAIRVEGISPSITAVDEDSLFGDWKMWDPISSG
EGDLLLENELMVANCHDLEKGSSASGSNKIKEQVEALQCSSAQEFHGSQFPTAKGALQSC
ELRKHNDSLTSAQLSGHEHEDAFLVNKDSSLQQPSLLLPSESSLELPSHPSHENSAIGAW
TKTSDVENNIQKIEVYEVVSSREDVSCPNVIVTAASGKVEGTISQAGGACPLDCGAGICI
NSTDDAVDSLAKRLESPFGISFDKQVTEHQILNNFAGGPSPIKCDNQNPSSFNTPLHMLE
SGNEGRIVDAVMDENLPTVSYARPDELSSFISEQPGSSDPNGAAQSAPDISVHDQQNDVI
HNGVHALEKFKSGRKSLSRDSLHVLHPLSRKIMMSHRCGKRKSKARQNSWRKRRITL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggtgtactttgatctcaatattccttacgtagagggaggtggaggacgtgtgggtgga
ggtggaggaaaggataaacagaagagcatcagggtaaagctagtggtgatggctatggag
ttgggctacactggcattgcctataattacaacatccatggagttatggctgattgccat
aggtgctctatcagccccctccctctctcctccctcctccagttggctccttccatctct
agtgtcgtccaattccataggaagatcctcaaagttcccttggactcaccgttccggcag
tatactagattgactgtcactgtcaacagcatgattcaggctgcatcgcttaactccggg
aacccggttctccaaacatatgatctggtggcagttcgaccgacgaaccaggctaccttt
gagcatgcttgtcaaaaagctcatgtagacttaattgcaattgatttttctgagaagcta
cagttccggttgaagtctcagatggtgaaagctgcaatacagcgtggtctatactttgag
ctgatctattcccctcttttgtctgacactattgcaaagtcagaactgattaatggtgcc
aagttgctagttgggtggactggaggaaagaatattattctatcaagttctgcatctaca
gtgaatgaacttagagggccatatgatgttgctaatttgtcaacattgcttggtctttcc
atgcagcatgctaaggctgctatgtctaggaactgcaggtctctaatgactaatgttatt
agaaaaaaacgattctacaaggaggctattagagtagagggcatttcaccatctattact
gctgtggatgaagattctttgtttggtgattggaaaatgtgggatcctatttcaagtggt
gaaggtgatttattattggaaaatgaacttatggttgccaattgtcatgatctggaaaag
ggttcatcagcatctggatcaaacaagattaaggaacaggtggaagccctacaatgtagt
agtgcacaagaatttcatggtagtcagtttcctacggcgaaaggtgctctacaatcttgt
gaactgagaaaacacaatgattccctgactagtgcacagctatcaggacatgaacatgaa
gatgctttccttgtcaataaggattcttctctgcagcaaccatcattgctgttaccatca
gaatcatcactggaactgccatcgcatccctcacatgaaaattctgcaatcggtgcttgg
acaaagacatctgacgttgagaataacatccagaaaatagaggtgtatgaggtggtttct
tctcgtgaagatgttagttgccctaatgtcattgtaacagctgcatcaggtaaggtggaa
ggaacaatatcccaggcaggtggagcttgtccattggactgtggtgcaggtatttgtatt
aactcaacagatgatgctgttgattcccttgctaagagattagagtccccatttggtata
tcctttgataagcaagttactgaacatcaaattctaaataattttgctggaggaccgtca
ccaattaaatgtgacaatcagaatccctcttcttttaataccccattgcacatgcttgaa
tccggtaatgagggaagaatcgttgatgctgtcatggatgagaatcttcctacagtgagc
tatgcaagacctgatgaattatcttcatttattagtgaacagcctggcagttcagatcca
aatggtgcagcccagagtgctcctgatatatcagtgcatgaccagcaaaatgatgtcatc
cataatggtgttcatgctttagaaaaatttaaatcaggaagaaaaagcctttcgagggat
tcgctccatgtgctccatcctttatcacgcaagataatgatgagccataggtgtggcaaa
agaaaaagcaaggcaaggcaaaactcttggaggaaacgaaggatcacactatag
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