Nymphaea colorata (blue-petal water lily): 116255250
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Entry
116255250 CDS
T07418
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116255250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116255250
03009 Ribosome biogenesis [BR:
ncol03009
]
116255250
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116255250
Spliceosome [BR:
ncol03041
]
Complex A
U1 snRNP components
U1 related factors
116255250
Complex B
116255250
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
Pre-60S particles
Helicases
116255250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SWI2_SNF2
OapA_N
Motif
Other DBs
NCBI-GeneID:
116255250
NCBI-ProteinID:
XP_031486884
LinkDB
All DBs
Position
5:complement(21812158..21831410)
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AA seq
477 aa
AA seq
DB search
MTAEQIEDVRLRLNVDVTIPPDTAPAPAPIESFADMCLNPSIMKDVAFHDYTRPTPIQAQ
AMPIALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQSPIRQGDGPLALVLAPTRELAQQI
EKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAGVHIVVATPGRFIDHLQQGNSCLSRI
SFVVLDEADRMLDMGFEPQIKEIMQNLPKKHQTLLFSATMPVEIESLAQEYLNKPVQVKV
GKVSSPTMNVSQVLEKVSESDKIDRLLSMLVEEASRAENTGQTFPLTIVFVERKTRCDEV
AEALIAEGLHAVSLHGGRSQTEREAALRDFRNGSSNILVATDVASRGLDVTGVAHVVNLD
LPKTMEDYVHRIGRTGRAGTIGHATSFYTDRDMFVVAQIRKGIADVESGNSLSFATGKVA
RKKEREIAAAQREVRLGMSKLSVAGGPTSISVDDKYRYMLTPANMRKEGAADDAWDD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggagcagattgaagatgttagattgcggttaaatgttgatgtgacgattcct
ccagacactgctcctgctcctgcaccaatagaatcattcgctgacatgtgcttaaatcca
agcattatgaaggacgtggcgtttcatgattatactaggccaactcctattcaggcacaa
gctatgccaattgctctaagtgggagggacctcttgggctgtgctgaaactggtagtgga
aaaacagctgcgtttgctatacccatgattcagcattgtttagctcaatcacctattcgg
caaggcgatggacctctggcactggtgttagctcctacaagagaacttgctcaacaaata
gaaaaagaggtcaaggccttcagcagatcgttggactctttcagaactgctatagttgtt
ggaggaacaaacatatcagagcagagatcggaactgcgagcaggtgttcatattgtggtt
gcaacacctggacggtttattgatcatttgcagcaaggaaacagctgtctctccagaatt
tcatttgtcgttttggatgaggctgataggatgctggatatgggttttgaaccacagata
aaagagatcatgcaaaatctcccaaaaaagcatcagacacttttgttcagtgcgaccatg
cctgtggagattgaatcccttgcgcaggaatacctaaataaacccgtccaagtaaaggtg
ggaaaagtaagttctccaactatgaatgtgtctcaagtgctggagaaggttagcgagagt
gacaagattgatcggcttctgtccatgcttgtggaggaggcatctcgggctgagaatact
ggacaaacttttccattaaccattgtttttgttgaaaggaagacaaggtgtgatgaagta
gctgaagctttaatagcagaagggttgcatgcagtttctcttcatggtggacgcagtcaa
actgaaagggaagcagctctgcgtgatttcagaaatggatcttcaaacattctggttgct
acagatgtagcatcgcgtggtttggatgtcacaggggttgctcatgttgtcaatcttgat
cttccaaagacaatggaggattatgtgcatcggattggcagaaccgggcgtgcagggact
ataggtcatgctacttccttttataccgaccgtgacatgtttgttgtggcacagataagg
aaaggaattgcagatgttgagtccggcaattcattgtcatttgctacgggaaaggtcgct
aggaagaaagaaagagaaatagcagctgcacagagggaagtgaggcttggaatgtccaaa
ttatcggtagctggaggtcctacatcaataagtgttgatgacaagtacagatacatgctg
accccggccaacatgagaaaagagggtgcagcagatgacgcttgggatgactga
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