Nymphaea colorata (blue-petal water lily): 116255329
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Entry
116255329 CDS
T07418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116255329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116255329
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116255329
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116255329
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116255329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
DUF3632
Motif
Other DBs
NCBI-GeneID:
116255329
NCBI-ProteinID:
XP_031486997
LinkDB
All DBs
Position
1:34504871..34517375
Genome browser
AA seq
1104 aa
AA seq
DB search
MEEGKYKSRAPNSLKNGGGFLLEMQPNTANSRKASEFSPAAAGPPVPPPSAPSSSPLLER
FRAFLREREEEMGVSSEGPSQEEIVDLYRLALLELTFNSKPIITDLTIIAGEQLAFGKGI
AAVICSRIVQVPTEQKLPTLYLLDSIVKNIGGDYIRYFAARLHEVFCKAYRQVDSSLYPA
MRHLFGTWVGFFPSNVLCAIEADLQFSPMRSQSSGLTSSRPISEANSPRPAHGIHVNPKY
LEARRCIDHPNLVRKGSPQNSVQSSSLEEERLEAETTGSRKVKQPHGAVFSSIPHGKVAS
IGHREYDFDQGEVSSQRMGIGKADLRRMPMETAPPIGGTERLVSSSRVKLTRPLSPARSS
SPPDGRTTLTRSPRKIIVEKASPSRSLLGSRTIEVRSDQREWHDMHLSYGANQMTVSSAA
MSSGGQSNGYSQHRRPLPGVLTDAYGNYRGKGTLHGKVSKIEQIDVTGINNGPATRSWQN
SEEEEYIWEDMSPTLSDRSKKNDLASSESTSVRTNTWMNLQTSSAQALKAGLNRGNHPSQ
DSRSFTNDRFNFVEEGNLVPYPGRRYNSRESLGTRRSRNEPLPHILSSGVGEEHSTLVHR
FGQPLQQQLELKAGMSSFQFVGPLGGVTQLSGQPNPSASSHVLETSMLDRYSRAPAMTGP
LQVEGYGLDKPPASSRVLTTEKYVAQRPHSPSVAWSPSPAALPLTSGHASRISQQKSQFD
LLEIKNSQANQGQNPHSINPLQRADDMEKKSAASVKLLELPYRHPLLTQPNHADSEQVIP
ILPPQGSSVFPGGQHLSVLTAAHPRNQGTLQEHGNMGVSPIISAPGISPLFIPSTVSSSH
ILGKPPLPPGLPPSLSQVGPPLLNSAPILPHPQSGNSLLGQQPGHALTGLISSLMSQGLI
KPPSVLQELIGLEFNEQVLRVRHESAINALYADLPRQCTTCGLRFKLQEEHSNHMDWHVT
KNRISRNRKQKQSRKWFVSAKEWLSGAEGVGADAVPAFLPIEMVSEKKEEEMAVPADENQ
NVCALCGEPFEDFYSDETEEWMYKGAVYMNAPDGFKEGMERSQLGPIVHSKCRSESTFLP
LEDADGVEMGEDDILSNQRKRIRL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagggaagtacaaatctagggcaccaaactccctgaagaatggaggaggattc
ctcttggagatgcaaccgaacactgccaacagcagaaaggcatcggaattctctcctgct
gctgctggtcctcctgtcccaccgccatccgccccctcctcctctcctcttctcgagcgc
tttagggccttcctgagggagagggaggaggaaatgggcgtctcctccgagggtcccagc
caggaggagatcgtcgacctctacaggctggcactcttggagctcaccttcaactccaaa
cccatcatcaccgacctcaccatcattgccggggaacagttggcgttcgggaagggaatc
gcggcggttatctgctccaggattgtccaggttcctacagaacagaagctgcctacatta
tatcttctggatagcattgtaaagaatattggtggtgattatattaggtactttgctgcc
cgtcttcatgaggttttctgtaaagcttatagacaagtagattcaagtttgtatcctgca
atgcggcacctttttggaacatgggttggttttttcccatcaaatgttctgtgtgccatt
gaagctgatttacagttttccccaatgagaagccagtcttctggcttgacatcttccaga
ccaatatcagaagcaaattctcctaggccagcacatggtatccatgttaatcccaagtac
ctggaagcaagacgctgcattgaccatccaaacctagtacgtaaaggcagtcctcaaaat
agtgtgcagagcagctctttagaagaagaaagattagaggcagagactacaggaagccga
aaagtgaaacagcctcatggggcagtcttttccagcatacctcatggaaaagtggcctct
attggacacagagagtatgattttgaccagggagaagtcagttctcaaagaatgggaatt
ggaaaggcagacttgcggaggatgccaatggagactgcacctcctattggtggaactgag
aggctggtttcatcatcaagagtgaagctcacaaggcccctttctcctgcaaggtcttct
tccccaccagatggtaggactacactaaccaggtccccgaggaaaattatagtagagaaa
gcatctccgtcgcggtctctacttggtagtaggacaattgaagtgcgtagcgaccagaga
gagtggcatgacatgcatttgtcttatggtgccaatcagatgacagtaagttctgctgca
atgtcctcgggtgggcagagcaatggatacagtcaacaccgtagaccccttccaggagtg
ctgactgatgcatacgggaactacaggggaaaaggtacccttcatggaaaggtgtcaaaa
attgagcaaattgatgtgactggcataaacaatggtccagctacaagaagttggcaaaat
tcagaggaagaagaatatatatgggaggacatgagtccaactttatctgatcgtagcaag
aaaaatgatctagcatcatctgagagcacttctgtacgcacaaacacttggatgaatctc
caaacatccagcgctcaagctcttaaagctggactaaataggggcaatcaccctagtcag
gattcacggtcatttacaaatgaccgtttcaattttgtggaagaggggaaccttgtgcca
tatcctggccgtaggtacaacagcagggagtctcttggtaccagacgtagcaggaatgaa
ccactgcctcatattctgtcatctggtgtaggtgaagagcatagtacattagtgcatcgt
tttgggcagcctctgcagcagcagcttgagctgaaggcagggatgagcagcttccagttt
gtgggaccactaggtggtgttactcagttaagcggtcagccaaacccctctgccagcagt
catgtgcttgaaaccagtatgttagacaggtattcaagggcccctgcaatgacaggacct
ttacaagtagaaggttatggtttggataaaccgccagcatcatctagggtgttgacaaca
gagaaatatgttgcacaaaggccacattccccctctgttgcgtggtcgccttctcctgca
gcactccctttgacttcaggtcatgcttccaggatttctcagcaaaagagtcaatttgat
ttgcttgagattaaaaattcacaggcaaatcaaggtcaaaatccacattcaattaaccct
cttcagcgggctgatgatatggagaagaagtcagccgcctcagttaagcttctggagttg
ccttaccggcatcctcttttgacacagccaaaccatgctgatagcgagcaagttattccc
attcttccaccacaaggaagttctgtgtttcctggggggcaacatttgtctgtccttacc
gcagcacatcccagaaatcagggaacactgcaagaacatggaaacatgggtgtttcacct
ataatttcagcacctggaatatctccattatttatcccatccactgtttcctcatctcac
attctaggaaaacctccgttgcctccaggactgccaccttccctatcacaagttggacct
ccattgttaaattcagctcctatcctgccccatccacaatcaggaaattcacttttgggc
caacaaccggggcatgcacttactggccttataagttctcttatgtctcagggattgatt
aaacctccatcagtattacaggagttgattggattggagtttaatgaacaagttctgagg
gttcgccatgaatctgcaatcaatgcactctatgctgacttgccaaggcaatgcaccact
tgtggactgcgcttcaaattgcaagaagaacatagcaatcacatggattggcatgtcacg
aagaatcgtatttctagaaatcgtaaacaaaaacagtcacgtaagtggtttgtaagtgct
aaggaatggttaagtggagcagagggtgtgggagcagatgctgttcctgcatttttgcct
attgaaatggtttcagaaaaaaaggaagaggagatggctgtcccagctgatgaaaaccaa
aatgtttgtgcattatgcggggagccttttgaagatttttatagtgatgaaactgaagaa
tggatgtacaagggagcagtgtacatgaatgctcctgatggatttaaggagggcatggaa
aggtcccaattgggacccattgtacattccaaatgcaggtcagagtctacattcctccct
cttgaagacgctgatggggttgagatgggggaggatgatatactgagtaatcaaaggaaa
agaattcggctctag
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