Nymphaea colorata (blue-petal water lily): 116255519
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Entry
116255519 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116255519
KO
K12830
splicing factor 3B subunit 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116255519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116255519
03041 Spliceosome [BR:
ncol03041
]
116255519
03036 Chromosome and associated proteins [BR:
ncol03036
]
116255519
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116255519
Spliceosome [BR:
ncol03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116255519
Complex B
116255519
Complex C
U2 SnRNP specific factors
116255519
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116255519
TFTC complex
116255519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
116255519
NCBI-ProteinID:
XP_031487229
LinkDB
All DBs
Position
6:complement(11411934..11434330)
Genome browser
AA seq
1389 aa
AA seq
DB search
MAVSEEELGAEPKPTNSVHYLAKTVLKGSAILHAAHGRIRSPTTFDIVLGKETSIELVEI
GQDGILQSVCEQTVFGIIKDLSVLRWNDKCRAFVSQTHGKDLLVVLSDSGKLTFLTFSIK
MHRFFPVAHIHLSQPGNSRYQLGRMLAVDPNGCFVAVAAYENQLAVLPVSASAGNNIVDK
KILYPAPLGGGPSSTRDSQDSISGTIWSFCFASRDFTRSANEACDPILAVIIHRKKKILN
ELLLLEFSSRDSSIHVMSHYKDGSPLFLAVDEVPHLPGILLLFKIGEVLLLDIRDPYHAN
CVYRANLCVPISSETKDVSNECCRTLEVDDEGIFSVAACALLELSDSGMDISKEDDPMSI
DGESSKFISNSSFICTWDWDPEKSANSKMIFCTDAGELYMLSVSCDVQGYFKVAITSCLY
DGLHCKKLLWVKGGFIASFVEMGDGLILKLDEGRLFYQSSIQNICPILDVSVVDYHNEEQ
YQIFAACGVGSEGSLRIIRSGINIEKLLRTAPIYEGVTGIWSLRMKKGDAFHAFLVISFV
EETRVLSVGVSFCDVTDSVGFFPDSCTVACGLVEDRVLVQICRHEVRICVPTVTAHSEGI
PSSYPICKSWKPEDLTINLGAVGNNLIVVATSNPCILFILGTRLLSFCNYEIFEIQKIKL
QAEVSCISIPQEDCSAQETLQSTITFAGGSPQAFLPNGIEICKTFVIGTHKPSVELLSLV
PREGFKVLAVGKISLTNAMGTAISWCIPQDVRIVILDQFYIVSGLRNGMLLWFQWPAISS
SSSSDYVSPNWTATDLPSMVLPLVTENMQQYVTVNVNEASEGSSPVQLQLVAARRIGVTP
VFLAPLSESLYADIIALCDRPWLLQTARQSQRIAYTSISFQSASHVTPICSADCPKGILF
VAENCLHLVELVHMKRLNVQKFDLGGTPRRILFHSESRTLLVMRTESSNDFISMSSDICR
VDPVSGFMNSCFKFDPGETPKCMQLTRVGNEQLLVVGTSLSTGRIIMASGEAESTKGRVH
VFCLESTQNSDSGSLALGSKSGSSAQLSSPFREIVGSTEELSNSSLCSSPDDNNLEGMKV
EEIEALHLRPIHSFKLSGAVLAVCPYLERYLLLSASNILYVYGFVNDNPQRLKKLASTRT
RFTITCLTAHHNRIAVGDCRDGILFYSYLEDQNKLEQLHCDPCQRLVADCALVNLETAFV
SDRRGSVAVLSSFSHLEDNASPERNLTLCCSYFMGETVMSVRKGSFSFRLPTDLIKGCSS
SEVLLDSADYTSVIACTLLGSVVIFVPLSREEHDLLVAVQGKLIAHPLTAPILGNDHTEF
RGRGSPMGVPQILDGDVLSQFLELTSLQQHAILSSDLLGSSGSKTKFSKSTLPVDQVVQL
LERLLNSLS
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtctgaggaagaattgggggctgagccgaagcccacgaatagcgtccactac
ttagctaagaccgtcctcaaaggcagcgccatccttcacgctgcccacggccgcattcgc
tccccaaccaccttcgacattgttctcggcaaggaaacatctatagagttggtagaaatt
ggtcaagatggaattttgcagtctgtttgtgaacaaacagtatttggaataataaaagat
ctctctgttctacgctggaatgacaaatgccgtgcgtttgtatcgcagacacatggaaag
gatctcttggtagtgctttcagattctggaaagcttactttcttgacgttcagcatcaaa
atgcacagatttttcccggtagcacacatccatctgtcacaaccaggaaactcaaggtat
caattaggaagaatgctggcagttgacccaaacggctgttttgtagctgttgctgcgtat
gagaaccaacttgctgttcttcctgtttcagcatcagctggaaacaatattgttgacaag
aaaattctatatcctgcaccacttggaggtggccctagctcaacaagggattctcaagat
tctatctcaggcacaatatggagcttttgttttgcttctagagatttcactcggtctgca
aatgaagcttgtgatcctattctagcagtcattattcatagaaagaagaagatcttgaat
gagctgcttcttttggaattcagtagtagagatagctccattcatgtcatgtctcactat
aaggatgggtctcctcttttcttagctgtagatgaagttcctcacttacctggaattttg
ttgctgtttaagattggtgaagttcttttactggatattagggatccatatcatgcaaac
tgtgtttacagagcaaatctatgtgtacctatttcaagtgaaaccaaggatgtttcaaat
gaatgctgtagaactctagaagttgacgatgaaggaatctttagtgttgctgcatgtgct
ttgcttgaattaagtgactctggaatggacatatcaaaggaagacgatcctatgagcatt
gatggtgaaagcagtaaattcatttcaaattcgagtttcatatgcacatgggattgggat
cccgagaaatcagcaaattcaaaaatgatcttttgtacagatgctggtgaattatatatg
ttgagtgtttcttgtgatgtccagggctatttcaaggttgccatcacttcttgtctttat
gatggcttgcattgcaagaaacttctctgggtcaagggtggttttattgcatcatttgta
gaaatgggggatggtttgattctcaagctagatgagggaagattattttatcagagctca
atccagaatatctgtccaatcctagatgtgtcagttgtggattaccataatgaagaacaa
tatcaaatatttgctgcttgtggtgtgggctccgaggggtctctgagaataatccgaagt
ggtatcaacatagaaaagcttctcaggactgcccctatttatgaaggagtgactggtata
tggtcactgcgcatgaaaaagggtgacgcatttcatgctttcctagtgatttcctttgtt
gaggaaacaagagtgctatctgttggtgtaagtttctgtgatgtgactgactctgttgga
tttttccctgattcatgcactgtggcttgtggccttgtggaagatagggttttggttcag
atttgtaggcatgaagtgagaatttgtgtgccaaccgttacagctcactcagaaggtatt
ccatcttcctacccaatttgtaaatcatggaaaccagaggatctcacaataaacttagga
gctgttggaaacaatctgatagttgttgctacttctaatccatgcattctgtttattctt
ggtacaagattgctgtctttttgtaattatgagatatttgaaattcaaaaaattaaattg
caagctgaagtgtcctgcatatcaataccacaggaggattgcagtgcacaagagacatta
cagagtaccataacatttgcaggaggtagtcctcaggcctttttgccaaatgggattgag
atttgtaaaacttttgttataggcactcacaagccttcagttgagcttctttctctagta
ccaagggagggcttcaaggtcctggctgtagggaaaatttcattaaccaatgctatggga
acagctatcagttggtgcattccacaagatgtgaggattgtaatcctagaccaattttac
atcgtctcaggcttgagaaatggaatgctgctatggtttcagtggcctgcaatttcttca
tcctcctcgtcagactatgtaagtcccaattggactgcaactgatctgccaagcatggtg
ttaccattggtgactgaaaacatgcaacagtatgtgacagttaatgtgaatgaggcgtct
gaaggttcatcaccagttcagttacaattagttgctgctcgtcgtattggtgtgacgcct
gtttttttggctcctctaagtgaatccctttatgccgacataattgcactatgtgatagg
ccttggttgctgcaaactgcaaggcagagccaacgaattgcttatacttcaatatcattt
caatctgccagccatgtcacgccaatatgttctgctgattgtcctaagggcattttgttt
gtggcagagaactgcctccatctggttgaattggtgcacatgaagaggttgaatgtgcag
aaatttgaccttgggggcacaccaagaagaatcttatttcatagtgaaagcagaacattg
ctagtaatgaggacggagtctagcaatgatttcatatccatgtcatcagatatttgccgt
gtggatcctgttagtggttttatgaattcgtgttttaaatttgatccaggtgaaacacca
aaatgtatgcagcttactagggttggaaatgagcagctgttagttgttggaaccagcctt
tccactggtcgaattattatggcgagtggagaagcggaaagcacaaagggacgtgttcat
gtgttttgtctagaatctacacaaaattcagatagtggttcattagcattgggttcaaag
tcaggttcatcagctcaattaagttctcctttccgggaaattgtgggatccacagaagag
ttatcaaatagtagtttgtgtagcagccctgatgataacaatctagaaggaatgaaggtt
gaagaaattgaagcactacacctgaggccaatccattcatttaaattgtctggagctgtt
cttgctgtatgtccataccttgaacgatatctcctgttatctgccagtaacattctctat
gtatatgggtttgtgaatgataaccctcaacgcttgaaaaagttggcatcaaccaggacg
cgctttacaatcacttgcctaactgctcatcataatagaattgcagttggagattgtcgt
gatggaatcctcttttattcctacctagaagatcagaataagttagagcaacttcattgt
gatccctgtcagaggctggttgctgattgtgctcttgtgaatttggagactgcttttgtg
tcagaccgccgaggaagtgttgctgtcttgtcttcttttagtcatctagaagataatgca
agcccagagcgcaatttaacactttgttgttcttatttcatgggagaaacggtgatgagc
gtgagaaagggatcattttctttccggctacctacagatctgataaagggctgcagcagt
agtgaggtgcttttggattcagcagattatactagtgttattgcatgtacgcttctggga
agcgtggtaatatttgtccctctctcaagggaggaacatgatttattagtagctgtacaa
ggtaaactaattgctcaccctcttactgcacctatactcggaaatgaccatactgagttt
cgcgggcgaggatctccgatgggcgtacctcagattcttgatggtgacgtgctgtcacag
ttcttggagctcaccagtcttcaacaacatgcaatactatcttctgatttgctgggttct
agtggttcaaaaaccaagttttccaagtcgacattacctgttgaccaggttgtccagttg
cttgaacgccttcttaattctctcagctag
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integrated database retrieval system
