Nymphaea colorata (blue-petal water lily): 116255673
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Entry
116255673 CDS
T07418
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116255673
09124 Replication and repair
03420 Nucleotide excision repair
116255673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116255673
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116255673
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116255673
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116255673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
GvpG
Motif
Other DBs
NCBI-GeneID:
116255673
NCBI-ProteinID:
XP_031487434
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All DBs
Position
6:7642339..7672867
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AA seq
626 aa
AA seq
DB search
MLVGQIFRLCASFSVEVQYSELLEMASTVTMRAKYKSAVKDPGIPGVLVMTEDKIVFTSN
DRRSTINEEFRNIKGHKFSKEGSKQALLNLTQDPEKGGGYIFEFEKFQDRDTCRDFVGKT
LGKIQSAAASGQGANAVSERSAVAVQDEQLSAEEMEHRMKLLRDNIELQKLHKQFVIAGV
LTEAEFWATRKNLLDRGTYRQPKQRTGFKSAMLADIRPSTDGRTNKVTFNLTAEIIHQIF
AEKPAVHRAFLNLVPGKMTEKDFWTKYCRAEYLNKTRNSVAAAAEAAEDEELAVFLKHDD
ILANEARRKIRRVDPTVDMEADIGDDYMHLPGHGILHDGMDNIDGANEFSRTLLQDLNRH
ASVVLEGRMLDVELRDTRTVAEALARSKQAEVANEISEEEANQKRLERVFQMTEMDDLQA
PHQLPFAPLCIKDPREYFESQQASTLKALGESGADAKTSACNLRTEEVYDSFRKHISHMR
TVGLKNPVIQLDVAAKVISGLTQHLSNTKYHLGKNPQESFLDRLPCRTKEELLLHWTSIQ
ELLQHFWSSYPVTSAYLYAKVNRLKDAMTQIYPKLQEAKETVQSEFRHQVSLLVQPMLQS
LDAAFAHYEAELQKTMKKNERSNGFL
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcttgttggtcaaatatttcgattatgtgcatcattttcagttgaggtgcaatattca
gaattattggaaatggcttctactgttaccatgcgagcaaagtacaagagtgcagtgaag
gatccaggaattccaggagtccttgttatgactgaagacaaaattgtgtttacatcgaat
gatcggaggtcaactatcaatgaagagtttagaaatattaaaggtcacaagttcagcaaa
gagggctccaagcaagcacttctaaatcttactcaagatccagaaaagggtggaggatac
atttttgagtttgaaaagtttcaagacagagatacctgtcgagattttgttggtaaaact
cttgggaagatccaatctgcagctgcaagtgggcagggggctaatgctgtttctgaaaga
tctgctgttgcagtccaggatgagcaacttagcgcagaagagatggagcataggatgaaa
ctacttagagacaacattgagctacagaagctgcataaacaattcgtcattgctggtgtt
ctgacagaggctgagttctgggctactagaaagaatttgcttgatcgtggaacctatcgg
caaccgaagcaacgcactggttttaaaagtgccatgcttgcagatattaggccatctact
gatggtcggacaaataaagtgacgttcaacttgactgcagaaataattcatcagatcttc
gctgaaaaaccagctgtacatcgggcttttctaaatttagtaccaggcaagatgacagaa
aaagatttctggacaaaatattgcagagcggagtatcttaataaaacgagaaattctgta
gcagctgcagcagaggctgctgaagatgaggagcttgctgtcttcttgaagcatgatgat
atattggccaatgaagctcgtcggaagattcgaagggttgatccaacagtggacatggaa
gctgatattggagatgattacatgcatctgccgggtcatgggattcttcatgatggcatg
gataacattgatggtgcaaatgaattctcgaggacattactacaagaccttaatcggcat
gcatctgttgtacttgaaggaagaatgttggatgtggagctaagagatacaaggaccgtt
gcagaagcacttgcaaggtccaaacaggctgaagttgctaatgaaatatcggaggaggaa
gcaaaccaaaaacgattagagagagtgttccaaatgactgaaatggatgaccttcaggca
cctcatcaacttccttttgcacctctttgcatcaaggacccacgtgagtactttgaatct
caacaagccagcacccttaaagcgttaggagaaagtggtgctgatgccaaaacaagtgct
tgcaatctgaggacagaggaagtctatgattcttttaggaagcatatttcccatatgcga
actgtgggattgaaaaatccagttattcagcttgatgttgctgccaaggtaattagcggc
ttgactcagcatctttcaaataccaagtatcatcttgggaagaatccacaagagagcttc
cttgatcggctaccttgcagaaccaaagaggaattgttgcttcattggacatccattcag
gaattattgcagcatttttggtcatcttatccagttacaagtgcatacctttatgccaag
gttaacagattaaaagatgctatgacacaaatatatccaaaacttcaggaggctaaagaa
acggtgcagtcagagttccggcatcaggtttctcttttagtgcaaccaatgcttcagtct
ttggatgctgcttttgcacactacgaagctgagttgcagaaaaccatgaaaaagaatgag
aggtcaaatgggtttctttaa
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