Nymphaea colorata (blue-petal water lily): 116256522
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Entry
116256522 CDS
T07418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116256522
09122 Translation
03013 Nucleocytoplasmic transport
116256522
03015 mRNA surveillance pathway
116256522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116256522
03041 Spliceosome [BR:
ncol03041
]
116256522
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116256522
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116256522
Spliceosome [BR:
ncol03041
]
Complex C
Other components
EJC/TREX
116256522
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116256522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
116256522
NCBI-ProteinID:
XP_031488762
LinkDB
All DBs
Position
6:6284327..6291008
Genome browser
AA seq
428 aa
AA seq
DB search
MGEARDNDNYQEELIDYEEEEELAADAVATKGAGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICNEFERFSTYLTDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDRDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEEI
DSSTYMQS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagcaagagacaacgacaactaccaggaggagctcatcgattatgaggaggaa
gaagagttggctgctgacgccgtcgccaccaagggcgctggagaatcggcgaagaaaggt
tatgttggcatccatagttcaggatttcgagacttcctattgaaaccagagcttcttcga
gctatagtagattgtgggtttgaacatccttccgaagtgcaacacgagtgcatcccgcag
gcgattctaggaatggatgttatctgccaagcaaagtctgggatggggaaaactgctgtc
ttcgttctgtcaaccttgcagcagattgagccagttgcaggtcaagttgcagcacttgtt
ttatgccatacgagggagttggcttaccagatctgcaatgagtttgaaagattcagcaca
tacctgacagatattaaggtggctgtattttatggtggtgtgaacatcaaaatacacaaa
gatctattgaaaaatgagtgcccacacattgttgttggcacacccgggagaattttggct
ctggctagggatagggaccttgctttgaagaatgtgaggcacttcattcttgatgaatgt
gacaaaatgctcgagtcacttgatatgcggagagacgtgcaagagatcttcaagatgacc
cctcatgataaacaagtgatgatgttttctgcaacactcagcaaagaaatccgccctgtt
tgcaagaagtttatgcaagatccaatggaaatttatgtggatgatgaagccaagttgaca
ctccacggtcttgttcagcattacataaagttgagcgaattggaaaagaaccgcaagttg
aatgacctcctagatgcattggatttcaatcaagttgttatctttgtgaaaagtgttagc
agagcagctgaacttaacaaattgcttgtggagtgcaatttcccttccatttgcattcat
tctggcatgtctcaggaagagagattgacgaggtacaaaggcttcaaagagggtcacaaa
aggattcttgttgcgactgatctggttggcaggggcatagatattgagcgcgtgaacatt
gtaatcaactatgatatgcctgactctgcagacacatacctacacagggttggcagagct
ggccggtttggcacaaagggtcttgcaatcacttttgtatcctcagcctctgattctgat
gttctaaatcaggtccaagaaaggtttgaagtagatataaaggagttgccagaggaaatc
gatagttcaacatatatgcaatcgtga
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