Nymphaea colorata (blue-petal water lily): 116256972
Help
Entry
116256972 CDS
T07418
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030
DNA replication
ncol03420
Nucleotide excision repair
ncol03430
Mismatch repair
ncol03440
Homologous recombination
ncol03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116256972
03420 Nucleotide excision repair
116256972
03430 Mismatch repair
116256972
03440 Homologous recombination
116256972
03460 Fanconi anemia pathway
116256972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncol03000
]
116256972
03032 DNA replication proteins [BR:
ncol03032
]
116256972
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116256972
Transcription factors [BR:
ncol03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116256972
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116256972
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116256972
MMR (mismatch excision repair)
116256972
DSBR (double strand breaks repair)
HR (homologous recombination)
116256972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
CDC24_OB3
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
116256972
NCBI-ProteinID:
XP_031489389
LinkDB
All DBs
Position
7:8185832..8191116
Genome browser
AA seq
612 aa
AA seq
DB search
MAVTVTPSAISTILSSPTPDSPSSIPDLVIQIVDLKPVGTSNTRFTFMANDGSMKLKAML
PTSISSEVQSGELQNLGLIRIIDYTCNAVPNQPQKVLIVTKCEVASPPLEEEVKTKVKLE
EETGIILRPKEETGIVLKPKLEANAKSAAQIIREHHENAPPTSRMAMTRRVHPLVSLNPY
QGNWTIKVRVTDKGIMRSYKNVRGEGSLFNVELTDEDGTQIRATMFNEAAKKFYPKFELG
KVYYISRGTLKLANRQFKTVPNDYEMTLNENSEVEEAAGEGISIPEVKFNFTKIDQLSQY
INGRELIDVIGVVQHVSSTLSIRRKSDNKDIPKRDITIADESKRTVVVSLWNDHATKVGQ
ELLDMVDTAPVVAIKSLKVGDFQGVSLSTLITSTVVINPDTSEAKKLRSWYDSEGKQSSM
ASVGSGMISSKTGSRSMYSDRVSLSHIVGDTSLGQDKPAWFSIIGYISFIKPDQTMWYRA
CKTCNKKVTEAIGSGYWCEGCQKNDVESSLRYIMVVRVTDSSGEAYVSTFNEQAEKIIGC
TADELEMIKSEDEKSYQSKLKEATWMPHLFRVSVVQSEYMNEKRQRITVRAEAPVDWAAE
TKHLLEKISKSN
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaaccgtgacaccatccgcgatctcaaccatcctttcaagccccacgccggat
tcgccctcatccatcccagatctcgtcatccaaatcgtcgatctcaagccagtcgggacc
agcaacactcgattcacatttatggcgaatgatggatcgatgaagctgaaggcgatgctg
ccgacctcgatttcttctgaagttcagtccggggaactccagaatctggggctgattcgg
attattgactacacctgcaacgcggtgcccaatcaaccccaaaaagtgttgatagtaaca
aaatgcgaggtggcatctccaccgcttgaagaggaggtgaagactaaggtgaaattggaa
gaagaaacgggcataattttgagaccaaaggaagaaacgggcatagttttgaagccaaag
cttgaagctaacgcaaagtctgctgctcaaattattagagaacatcatgaaaatgcccct
cccacctctcgaatggctatgacaagaagggttcatcctttggtttcactaaatccatat
caagggaattggactataaaggttcgggtcactgacaaaggcatcatgcgctcgtacaag
aacgtgagaggcgaaggaagtctgttcaatgtggagctgacagatgaagatggaacacag
attcgggcaaccatgttcaacgaagctgcaaaaaagttctatcctaagtttgagttggga
aaagtgtattacatttccaggggaactcttaaacttgccaatagacaatttaaaactgtt
ccaaatgattatgagatgaccttgaatgagaactcagaagttgaagaagccgctggtgag
gggatctctatcccagaggtgaaattcaacttcaccaaaattgatcaattgagtcaatac
attaacggtagagaacttatagatgttattggggtggttcaacacgtttcaagtactctt
agcattcgaaggaaaagtgacaataaagacatcccaaagcgtgacatcactattgcagat
gaatcgaagcgcacagttgttgtctcactatggaacgatcatgctacaaaagttggacaa
gagcttcttgatatggtagatactgctccagtggtagcaatcaagagcctcaaagtaggt
gattttcaaggagtttctctttctacattgatcacgagtacagtagtcataaatcctgac
acttctgaagcaaagaagttgaggtcctggtacgattctgaaggtaaacagtcatccatg
gcttctgttgggtctggcatgatctcatcaaagacaggatcaagatcaatgtactccgac
agagtgtctctttctcatattgttggggacacatccttggggcaggataagccggcatgg
ttcagtattatagggtatataagcttcatcaagcctgaccagacaatgtggtaccgtgca
tgcaaaacatgtaacaagaaggttacagaagcaattgggtctggttattggtgtgaagga
tgccaaaagaatgatgtggagagctctttgaggtatataatggttgtgagagttaccgac
tcatctggggaagcgtatgtttctactttcaacgaacaagcagaaaaaattattggttgc
acagcggacgaactagaaatgatcaaatcagaggatgagaaatcctatcaaagcaaattg
aaggaagccacatggatgcctcatcttttccgagtaagtgttgtgcaatcagagtacatg
aacgagaaaaggcagaggatcacggtgagagctgaagctccagttgattgggcagctgaa
acgaagcaccttttggagaaaatatcaaagtctaactaa
DBGET
integrated database retrieval system
