Nymphaea colorata (blue-petal water lily): 116257030
Help
Entry
116257030 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116257030 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116257030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116257030
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116257030
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116257030
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116257030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
116257030
NCBI-ProteinID:
XP_031489488
LinkDB
All DBs
Position
1:complement(13393413..13408463)
Genome browser
AA seq
1186 aa
AA seq
DB search
MEMESSRRPADKTRELGLKRPRLAEQAERNRAGSADGAFIPRFRVSDRERGSGKGRGIVD
EEKERDDLGRGAYHQQQELLSQYKAALGELTFNSKPIITNLTIIAGENTHAAKGISATIC
GNILEPNLQVPSEQKLPSLYLLDSIVKNIGGEYVKYFAARLPEVFCKAYRQVDTTIHPSM
QHLFRTWKGVFPPPPLRAIEQDLNFPPVNGSSSGVPASRSDSQSQRPGHGIHVNPKYLEA
RQRLQSGRSRGIETENNGNLLLEGAERPERTSLSESPKPWIEAPAKVASMQRPQRGEHFV
ESLFGKKPDLGNGDYEFSSDSVSLQGKGITRSSERDIEGDGGDQAWYGGIENSETSATFG
KRNGYDMANLPPRGGVNSYDNYRASRSAQTLPQLNSGSTVSSFSGRGISRNWKNSEEEEF
MWDDMNSRTIDLGGSDALRKGGWNSNLFEKPSSVQMHKWIQTGSEDLDSNWSQIGNLSRS
SRPMEADDDQFPSHRNLEEQVQQSYSQKDGGSRDNREASVDSSSVGQGEAAFVHQTGRVP
REKLNQFHTTSRLLNIDTLNPSSTASSDVGQLEGCTVALGGNLHSNVALPSIGRAGVGGQ
AGPVGPSSFVGPFDGIPGRRQQQPRRPASPSMLTSLHQRPHSPSSVSHRVHTEVQQPYGL
PEHHAQATSFLPGKKSSNAVSQSATPRQVQGIKELPYISQHLTQANTSGRSQLHQQLKPL
QHSHGASSPAQQGMHLPVVQPEPSQTARQSWQPQAQPQGFGLQATGYSSSGLLKKSCGGL
PAESSADRVMAAILKSGLLPAQTALSTDVPKSPTGFSSTNCPEAGQSQLHLNVQPPLPNG
PPPVQLSASSHTASLSTSIVGSGPLGALPAVCLPLSGTSQPPLPPGPPPVSSQSSSSGKV
AKNPLSSLLSSLVAKGLISTSAPELSKPTPVQVPNQIEDQSDGRAATSNLASTVSPFTPP
DGELSVSESSSMPSGRSNASTEIKGRVGIEFKPAIIRRFHLSVINGLFDELPHQCSMCGL
RFKFEHNLSKHLNWHASSKLKLEKGKRISRMWYLSWRDWVEGASGPSSVPIHSPEKEMVL
LEPMVPADESQSICISCGEPFEDFYCHKRDEWMFKGAIYMTLPTDGSAGKNLQKLIVHAN
CITESTIDGSAGKNLQKLIVHANCITESTIDSLKAPQTSHMDQASR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctctaggaggccggcggacaaaactagggagctcgggctgaagaga
cctagattggctgagcaggccgagaggaatcgggctggcagcgctgatggtgcgttcatc
cctaggtttagggtgagcgacagggagagaggcagtggcaagggaaggggtattgttgat
gaggagaaggaaagggacgacttgggaagaggagcttaccatcagcagcaggagctcttg
agtcagtataaggcggcgctcggagagctaacttttaattcgaaacctattatcacgaac
cttacgatcattgccggggagaacacccatgccgcaaagggaatttcggccactatctgc
gggaacattctagagccaaacttacaggttcctagtgagcaaaagctgccttctctgtat
cttctagacagtattgtaaagaacattggaggggaatatgtcaaatattttgctgcaagg
cttcctgaggtattctgtaaagcctacagacaggttgatacaaccatacaccctagtatg
cagcatctctttaggacctggaaaggtgtattccctcctccaccacttcgtgccattgaa
caggaccttaattttcctcctgtaaatggttcatcttctggagtccctgcatctaggtct
gattctcaatctcagcgcccaggacatggtatccatgtaaatcccaagtacctggaagca
aggcagcgtcttcaatcaggcaggtctagaggaattgaaactgaaaacaatggaaactta
ctgctggagggagcagaaaggcctgaacgaacctctctttctgaaagcccaaagccatgg
atagaagctcctgctaaagtggccagcatgcaacgtcctcaaaggggagaacattttgtt
gagtctttgtttggtaagaaaccagacttgggaaatggagactatgaatttagttctgat
tctgtgagccttcaaggcaagggaattacaagatctagtgagagggacattgagggggat
ggaggcgatcaggcttggtatggaggaatagaaaacagtgaaacaagtgccacatttggt
aaaaggaatggctatgatatggcaaacttaccgccacggggtggagtcaattcctatgac
aactacagagcttcaagatctgcccaaactttgcctcagctgaattcaggttcaactgta
tcaagtttcagtggtagaggcatttcaagaaattggaagaactctgaggaagaagaattc
atgtgggatgatatgaactccagaacaatagatctggggggctcagatgcattacggaaa
ggtggctggaatagcaatttgtttgaaaagccttcaagtgtacagatgcacaaatggatc
cagacagggtctgaagacttggattcaaattggagtcaaattggtaatttatctcgatcc
agcaggcctatggaagctgatgatgatcaatttccttcacacaggaatcttgaagagcag
gttcaacaatcttatagccagaaagatggtggctccagggataatcgtgaagcatccgtg
gattcatcatccgtaggccaaggagaagcagcttttgttcatcaaacagggagagttcct
cgagaaaaactgaaccagtttcataccacatctaggttactcaacatagatactttaaat
ccttcaagcacagcttccagtgatgtaggtcaactagaagggtgcactgttgctttaggt
ggtaatttacattcaaatgtggctcttccatctataggtagagcaggtgttggagggcaa
gcagggccagttggtccttcgagctttgttggcccatttgatggaattcctgggcgtcga
cagcagcaacctaggaggcctgcatcaccttcaatgcttacatcattgcaccagcgccca
cactcaccatcttcagtatctcatcgtgttcatactgaggtccagcagccatacggtttg
cctgagcatcacgcgcaagcaacctcctttcttcctggtaaaaaatcttcaaatgctgtc
agtcagtcagccactccacgacaagtccaaggaattaaggaacttccttatatatctcaa
catctcactcaagctaacacgtcaggccgctcacaactgcaccagcaattgaagcctctt
cagcattctcatggtgcatcttctccagcacagcaaggaatgcaccttcctgttgtgcaa
ccagaaccatctcaaacagccaggcagtcatggcagccacaagcacaacctcaaggtttt
ggactccaagctacaggatactctagttcaggtctccttaagaagtcttgtgggggcctt
ccagctgaatcaagcgcagacagggtaatggctgctattctgaagagtggcttgctacct
gcacagactgctttgtcaaccgatgtgcctaaaagccctaccggtttctcaagcacgaat
tgtcctgaggctgggcaatcacaattacatttaaatgtacagccccctctgcctaatgga
cctccacctgttcaattgtcagcatcctcacacactgcatctttgtctacatctattgta
ggttcaggtccactgggtgcattgccagctgtgtgcttgcctctttctggaacttctcag
cccccattgccacctggtcctccgcctgtgtcttcacagagttcaagttctggaaaggtt
gcaaaaaatccgctttcgagtttgttgagctctttagttgctaaaggtttgatatccaca
tcagcaccagagttatcaaagcctactccagttcaggtgccaaatcagattgaagaccag
agtgatggccgtgctgccacctcaaatttggcttcaacagtttctccttttactcctcca
gatggtgagctctctgtttctgagtctagttcaatgccttctggtcgttcaaatgcatca
actgaaatcaagggcagagttggaattgagtttaagccggcaatcatccggaggtttcac
ttgtctgtcatcaatggtctatttgatgaacttccacatcaatgcagtatgtgtggcctt
cgattcaaatttgaacacaatcttagcaaacaccttaactggcatgcttcaagtaagctt
aaacttgagaaaggtaagagaatatcaagaatgtggtaccttagttggagggactgggtt
gagggggcttctggtccatcctctgtcccaatccatagcccagaaaaggaaatggtgctg
cttgaaccaatggttcctgctgatgaaagccaaagtatatgtatatcatgtggggagccg
tttgaagatttttattgtcacaagagggacgagtggatgtttaaaggggcaatatatatg
actctccctactgatggttctgctggcaagaacttacagaagttaattgtgcatgccaac
tgcatcacagaaagcaccattgacggttctgctggcaagaacttacagaagttaattgtg
catgccaactgcatcacagaaagcaccattgacagcttaaaggcgcctcagactagtcat
atggaccaggcaagtagatga
DBGET
integrated database retrieval system
