Nymphaea colorata (blue-petal water lily): 116257400
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Entry
116257400 CDS
T07418
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116257400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116257400
03036 Chromosome and associated proteins [BR:
ncol03036
]
116257400
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116257400
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116257400
PBAF complex
116257400
GBAF(ncBAF) complex
116257400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
116257400
NCBI-ProteinID:
XP_031489971
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Position
7:19057357..19064026
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AA seq
583 aa
AA seq
DB search
MQDSGEPLSNFIPRDDGGSMPSTAERKVELVPDSSESARELYTIPSYSSWFSWDDIHEIE
KQHLKEFFDGSSISRTPRIYKEYRDFMINKYREDPTRRLTFTELRKMLIGDVCLIHKVYD
FLDSWGLINFQSSDQSKEECEEAQFSLVVEEGIPLGIRVILNPAKSSSSSSTGEKGDDKF
KFPPLTSYVDVFDSSKTSKENGGAERHSPSERVCVNCLQECGSSHYFSEKEEILICANCF
KSGNYGQGRSADDFSLKDCANNTSNDVSESWSDAEVLLLLEGALKYGDDWDLVAGHVKTK
SKHDCILKLIQLPSVDHMVSNPNSRANHRNNDTKGAVATSFEVTKIEDQDDEHSAGTTVP
LESVEGHSVKRRCLSPLADAGTSLITQVASLSTMVSPSVAVAAAEAAVSALCNESPSARM
LLGTDMEERAHGYGAAVLLEFERAKAVETCKIGKRDEQLGKPPVSIDEKIGTSMLRMRAA
VATALGAAAANAKLLADQEDREIEHLVSSIIEAQVRKIECKIKHFEELEQIMDNEYVYTQ
NVKDSVLSVHLDILQRNLNAGILRGSNQTYVKPFVGLPEMSWT
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcaggactcgggcgagccgcttagtaacttcattccccgagacgatggcggatcgatg
ccttcgactgccgaacgcaaggtggagctggtgcccgattcgtccgagtcggcgcgggag
ctgtacacgatccctagctactcgagttggttttcttgggatgatattcatgaaatagag
aagcaacatcttaaggaattctttgatggtagctcgatttctagaactccccggatatac
aaggagtaccgtgatttcatgattaacaaatatcgggaagaccccacaagaagattaaca
ttcacggagttgaggaaaatgttgattggagatgtttgtttgattcacaaagtgtacgac
ttcttggacagttggggcttgattaactttcagagctctgatcagtctaaggaagaatgt
gaagaagcacagttctcgttggttgttgaagaaggaattccattgggtattcgagtgatt
ctgaatcctgcaaagagttcttcctccagtagtaccggagagaagggtgatgacaagttc
aagtttccgccgttgacatcttatgtggatgtgttcgacagttcaaaaacttctaaagaa
aacggaggagcagagcgtcactctccatctgaacgtgtttgcgtcaattgtttgcaggag
tgtggttccagtcactacttctctgagaaggaagagattttgatttgtgcaaattgcttc
aagagtggaaattatggtcaaggaaggtctgctgatgatttttctctcaaagattgtgct
aataacaccagcaatgatgtgtccgagtcatggtctgatgcagaagtgttacttctcttg
gaaggtgctctcaagtatggggatgactgggaccttgttgctggtcatgtgaaaacgaaa
agtaaacatgattgtattttaaagctcatacagcttccgtctgttgaccacatggtgagc
aaccctaatagtagagctaaccataggaataatgacaccaaaggagcagtggctacatca
tttgaggttaccaagattgaagatcaagatgatgaacattctgcagggaccacggtaccc
ttggaaagtgtggaaggccattctgtcaagcggcgatgtctttcaccacttgctgatgct
ggcacctcattgattacacaggttgcttccctgtccacaatggttagcccctctgtggca
gttgctgcagctgaggctgctgtttctgccctatgcaatgagagcccatctgcaaggatg
ttgttaggcactgacatggaggaaagggctcatggctatggtgctgcagttttgctggag
ttcgaaagagcaaaggctgtggaaacatgcaagattggaaaaagagatgaacaattaggt
aaaccgcctgtcagcattgatgaaaaaattggcacatcaatgttacgaatgcgagctgct
gttgctactgcactgggtgcagcagctgcaaatgcgaagctacttgcagaccaggaagac
agagagattgaacacttagtgtcaagtatcattgaagcacaggttaggaagattgaatgc
aagatcaagcatttcgaggagttggagcagataatggacaatgaatatgtctatacacaa
aacgtgaaagattctgttctctctgttcatcttgatattttgcagagaaacctaaatgct
ggaattctgagagggagtaatcagacatatgtcaaaccctttgtgggattaccggagatg
tcttggacgtag
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