Nymphaea colorata (blue-petal water lily): 116257567
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Entry
116257567 CDS
T07418
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116257567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116257567
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116257567
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
Iml2-TPR_39
TPR_9
TPR_CcmH_CycH
NatA_aux_su
DUF1993
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
116257567
NCBI-ProteinID:
XP_031490307
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Position
1:32018893..32047773
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AA seq
772 aa
AA seq
DB search
MEDLRLAEKKARDCLAVDKYNVEASETLANIAQFLPIAESAPIYEQLLSTFPTVAKFWKQ
YVEAQMAVNNDDAVKHIFSRCLLNCLQIALWRCYIRFIRKVNEKKGAEGQEETRKAFDFM
LSYVGTDISSGPVWMEYITFLKSIPAVTVQDESQRMTAIRKAYQRAIVTPIHHVEQLWRD
YESFENSVSQALAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMIAVPPTGSCKEEQQC
MAWKRLLTFEKTNPQRIDVASSNRRVAFTYEQCLMYLYHYPDIWYDYATWHARSGSMDAA
VKIFQRALKALPESEVLCYAYAELEESHGEIQAAKKVYENLLANSETATALSHIQFIRFL
RRTEGIEAARKYFVDARKSPNCTYHVYVAYAIMAFCLDKDPKVAQNVFEAGLKRFMHEPG
YILEYADFLCRLNDDRNVRALFERALSLLPPEESVEVWKRFAQFEQTYGDLGSMLQVEQR
RKEALSSRGEESSSSLESSLYDVVSRYSFMDLWPCSSRDLDHLARIEWLAKNINRKGDKT
TLPYETGSSEKNLALQAPNSKTGLASTKVIYPDVSKMVIYDPRQKPGAGLPPNATVPGLP
IVSASTSLTNSLSSVGNGTSKTPDEMLKVMSPALVTFIAHLPVVEGPSPNVDIVLSILAQ
CNFPTGATGKSTRLQHQSAVGPVQSTTNDLAGPAKSWSNANSSSARPQSHAGKRRDSDRQ
DDDEITVQSQPLQRDIFRLRQMRRARGLTSSQTGSASVGSGAISGEPSGSSG
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggaggatttaagacttgcagagaaaaaagctagagattgtcttgccgtggataaatac
aatgttgaggcctcagaaacacttgcaaatatagcacagtttttacctattgcagagtct
gcaccaatatatgagcaacttctttctacatttccgacagtggccaagttctggaagcag
tatgtcgaagctcaaatggctgtgaacaatgatgatgcagtaaaacatattttcagtcgt
tgcctgttgaattgcctgcagattgctctctggaggtgctacattcgtttcatcaggaaa
gtaaatgaaaagaagggagcagaagggcaagaagagaccaggaaggcatttgatttcatg
ctgagctatgttggtactgacatatcctctgggcctgtatggatggagtatatcactttt
ttgaagtccatacctgctgtcactgtacaagatgaatcacaacgcatgactgcaatacga
aaagcatatcaaagagcaattgtgaccccaattcatcatgtggaacaactatggagggac
tacgaaagctttgagaactctgttagccaggcattggctaagggcttattatctgagtat
caaccaaagtataatagcgcaagagcagtgtacagggagcgaaaaaaatatgtcgatgag
atagattggaatatgattgctgttccaccaactggttcctgcaaggaagagcagcaatgc
atggcatggaaacgcctgttaacttttgaaaaaaccaatccacaaaggattgatgttgcc
tcgtctaacagaagagttgccttcacatatgagcagtgtttgatgtatctataccattat
cctgatatttggtatgattatgctacatggcatgcaaggagtggctcaatggatgctgca
gtcaaaatctttcagcgtgctctgaaggctttacctgaatctgaggtactatgttatgct
tatgcggaacttgaagagtcacatggagaaattcaggctgctaaaaaggtatatgaaaat
cttttggccaacagtgaaacagcaacagcattgtctcacattcagtttattcgatttctg
agacgaactgaaggcatagaagcagcccgcaagtactttgtggatgctcgtaaatctcca
aactgtacatatcatgtttacgttgcttatgcaattatggccttttgtcttgacaaggat
ccaaaggttgcacaaaatgtatttgaagctgggttaaagagatttatgcatgagccagga
tacattctcgagtatgcagatttcttgtgccgcttaaatgatgatagaaatgttcgtgct
ttatttgaacgagccttgagtttgcttcctccagaagagtctgttgaggtatggaaacgt
tttgcccagtttgagcaaacatatggtgaccttggaagcatgttacaagtagagcaaaga
aggaaggaagctctttctagcagaggagaagagagctcatcatctctggagtcctctctt
tatgatgtcgtgtcccgctatagttttatggacctttggccttgctcatccagggatttg
gatcatttggctcgtatcgaatggctcgctaaaaatattaacaggaaaggtgacaaaaca
acactaccttatgagactggttcttcagagaagaatttggctttgcaggcaccaaattct
aaaactggtctggcatctacgaaagtaatttatccagatgtatcaaagatggtcatttat
gatccaagacaaaaacctggtgctggacttcctcccaatgcaactgtacctggccttcca
attgtttctgcttccacctccttgacaaacagtttgagttcagttggcaatggaacatca
aagactcccgatgagatgttgaaagtaatgtcaccagccttggttacgtttatagcacat
ctgccagtagtggaaggcccatccccaaatgtagacattgtcctgtccatattggcacag
tgcaactttcctactggagctactggaaaatcaactaggttacaacatcaatcggctgta
ggtcctgttcaaagcaccacaaacgatctagcagggccagcaaaatcatggtcaaatgca
aatagctcatctgcaagaccacagagccatgcaggaaaaagaagggattctgatagacaa
gatgatgatgaaataaccgtacagagccaaccgctgcagcgagacattttcaggcttcga
caaatgcggagggctaggggcttgacctcttcacagactggatccgcgtctgtggggagt
ggagctatttctggggaaccttctggaagtagtggatga
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