Nymphaea colorata (blue-petal water lily): 116258341
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Entry
116258341 CDS
T07418
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116258341
03036 Chromosome and associated proteins [BR:
ncol03036
]
116258341
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
116258341
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
116258341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
SPT6_acidic
HHH_7
YqgF
HTH_44
Spt6_S1
Tex_central_region
HHH_9
S1
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
116258341
NCBI-ProteinID:
XP_031491308
LinkDB
All DBs
Position
1:37125084..37137990
Genome browser
AA seq
1662 aa
AA seq
DB search
MGGRNVISDEEDEFEDVVRGREAGDEVDARDDEEDDEEEEEEGQDEYEKDGFIVDDVEEE
EEQEEEEEDQEELRSKKKKRRKRETEENYELDEDDYELLQEANVTGFHRPKPGSKKFKRL
KKAGRNNDHEEGSGFTDDEEINEIDRSGRTAEEKLKRSLFGDDEGVPQDIAEEEELQEDV
EEEEDIGEEDEMADFIVDEEEVDENGVVMRKRRPKKKILRQAPGVSSSALQEAHDIFGDV
DELLLLRKQGLKKGGGYDDSGDWREKRLEDEFEPSVIKEKYLSEKDNQIRDKDMPERIQL
FEEMVGPIPEDDESIQAEATWIFNQLSGSAMLRLFGEHAAVPEIDREDIANVLGMLHVQK
FEIPFIAMYRKELCLSLLRDPVQDAAAGEDNKRHVKWHKLLWAVHNLDKKWLLLQKRKNS
LQLYYKKRASEEANIDVSKKKLLESLVDMLKNADSERVVDDIDLKFNLHFPPDEVDAEEG
QFKRPKRKSLYSICRKAGLGDAAGMFGLSPEKFGKLLGLEEMGEQVVDARETPEEVALKF
QSREFETPQDVLKGARHMAAVEISCEPSVRKHVRDLYVEHAFISTKPTHEGNAVIDSFHP
LAAVKWLRDKPVSEFCDAQWLLIQKAEEEKLLQVTIRAPDIPKLEHQFYENYLSDSVSRC
AQLWNEQRKLVVKDALFGFLLPSMEKEARALLTARAKSWLLLEYGSQLWSKVSVAPYKRK
ENDAQAKDADDEVATEEEVAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGFLSIRSQ
SANHQQRKKMDQERLLKFMTEHHPHVVVLGAVNLSCPRLKDDIFEVIFKIVEDHPYDVGH
EVDELSVVYGDESLPRLYENSRVSLDQLPAQQGIVRRAVALGRYLQNPLAMVATLCGPGR
EILSWKLNVLESYLTPDEKYEMIEQVLVDVTNQVGIDVNLAACHEWLFAPLQFVSGLGPR
KASSLQRAVVGAGRIYSRKEIPMNLGVLKRNVFMNAAGFLRVRGSGQAALGNHVLDLLDD
TRIHPESYDLARKMAKDVYAEDVGQDINDLDEDAQEMAIEQVRGSVNLKRLDIDAYSGSI
ELHLGTSKRETLYDIKMELLHGFTDWRAPYSEPTQDEEFYMISGETPETLAEGRLVQATV
RRVQGQRIFCELESGLMGLISKEDFSDERDFELTERVAEGSIVTCKIKFIRKDRHQVILT
CKGSDLRNNRLQSKQPKDPYYAEDESSLQNDLEKARKEKELAKKSFKPRMIVHPRFQNVT
ADEAISFLADKEAGESIVRPSSRGPQYLTLTLKVHDGVYAHKDIIEGDKDQKDITSLLRL
GKTLKIGEDTFEDLDEVMDRYVDPLVANLRVMLGYRKFRRGSKAEVDEDLKHEKAANPMR
IVYSFGVSHEHPGTFILSYIRSSNPHHEYIGLYPKGFKFRSKMFESLDRLVAYFQRHIDD
LQHSSVPPIRSVAAMVPLRSPASGGGSVGSGWGGSTTSSGDGWRTRGHSDRDRSATPASR
TGRGDYRNGNARDGHPSGLPRPYGNDRGRGGRGGRGHRDGQDSFTSNWGQSSDSKDGGGG
GGAWGGSFGGTNAPKSPSRGDAPGTWGSSGAWGSGGGEWEATKNPSAPDVGDAGWEATKK
LDALAVSDPPQGMQNGSNGGGAGGWGASGGRWAGDPDVPGGW
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcagaaacgtgatctcggacgaagaagatgaatttgaggatgtggtccgtggc
cgtgaagcaggagacgaggttgatgcaagggatgatgaagaggatgatgaagaggaggaa
gaagaagggcaagatgaatatgagaaggatgggttcattgttgatgatgtagaagaagaa
gaagaacaggaagaagaggaggaggaccaggaggagttaaggtccaaaaagaagaaaaga
aggaaaagggagactgaggaaaactatgaactcgatgaagatgactatgagttgcttcag
gaggccaatgttacaggattccatcgacccaagcctggcagcaaaaagtttaaaagacta
aaaaaagctggtcggaacaatgaccatgaagagggatctggctttactgatgatgaagag
atcaatgaaattgaccggagtggtcgtactgctgaagaaaaactgaagcgcagcttgttt
ggtgatgatgaaggggtgccacaagatattgctgaagaggaggaactgcaagaagatgtg
gaagaagaagaagatattggtgaagaggatgaaatggctgattttattgttgacgaggaa
gaagttgatgagaatggagttgttatgagaaagaggaggccaaaaaagaagattttaaga
caggctcctggagtatcatcatctgcactacaagaagctcatgatatatttggtgatgtc
gatgagcttcttttgcttcgcaagcaaggccttaaaaagggtggcggttatgatgattct
ggtgattggagagagaaaagacttgaggatgagtttgaacctagtgttatcaaggagaag
tatttgtcagagaaagacaatcagatccgtgacaaggatatgcctgagaggattcagtta
tttgaagaaatggttggtcctattcctgaagatgatgagagtatacaggcggaggcaact
tggattttcaaccagctaagtggctctgcaatgttgcgtctgtttggagagcatgctgca
gtcccggagattgacagggaggacattgccaatgtcctgggaatgctgcacgttcagaag
tttgagattccttttattgcaatgtatcgaaaagagctatgtctcagcttgttaagagat
ccagttcaggatgctgcagcaggtgaagacaataaacgccatgtgaagtggcataagttg
ctctgggctgtgcataacttggataaaaagtggcttcttcttcagaagaggaagaattct
ctgcagttatattacaaaaaacgagcatctgaggaagcgaacattgatgtgtccaaaaag
aaacttcttgagtcgcttgttgatatgcttaagaatgctgactccgagagagtagttgat
gacattgatctgaagtttaacttgcactttcctcctgatgaagtggatgcagaggaggga
caattcaaacgaccaaagagaaaatccctctacagtatttgtcgtaaggctggactaggt
gatgcagcaggcatgtttgggctcagtcctgaaaagttcggaaaacttcttggactggag
gagatgggtgagcaagtggttgatgctagggaaacacctgaggaagttgcactaaaattt
caatccagagagtttgagactcctcaggatgtccttaaaggtgccaggcacatggctgct
gtagagattagctgtgagccgtctgtgcggaagcatgttcgtgatctatatgttgaacat
gctttcatctccacaaagcccactcatgaggggaatgcggttatcgattctttccatccc
cttgcagctgtaaaatggctacgagataaacctgtctctgaattttgtgatgcacaatgg
cttcttatacaaaaggctgaagaggagaagcttcttcaagttaccataagagctcctgat
attccaaaattagagcatcaattttatgagaactatcttagtgacagcgtgagtagatgt
gcacagctttggaatgaacaacggaaattagttgttaaggatgctttatttggttttctt
cttccatcgatggaaaaagaagctcgagcactgttgactgctagagctaagagctggtta
cttttggaatatgggagtcaactgtggagtaaagtttcagttgctccatataaacgaaaa
gaaaatgatgcccaggctaaagatgctgatgatgaggttgctactgaagaagaggttgca
ccacgagttatggcctgttgctggggtcctggaaaaccagccacgacatttgtgatgtta
gattcatctggtgaagttcttgatgtgttgtatactggttttcttagcattcgctcacag
agtgctaaccatcagcagcgcaagaaaatggatcaagaacgtcttttgaaattcatgact
gaacatcacccacatgttgttgttcttggagctgtaaacttatcctgtccgcgcctcaag
gatgatatttttgaggtaatttttaaaattgtagaggatcatccttatgatgtcggacat
gaggtggatgagctaagtgttgtttatggcgatgaatccttgcctcgtctgtatgaaaat
tctagggtttctttggatcagctgcctgcacagcagggtattgtaaggcgtgcagttgct
cttggacgttacttgcaaaatcctctggccatggttgcaacactttgtggtccaggaaga
gaaatattatcatggaagcttaacgtcctggagagctaccttactcctgatgagaagtat
gagatgattgagcaggtgttagtagatgtaaccaaccaagtgggtattgatgtgaatttg
gctgcttgtcatgaatggctttttgctccacttcaatttgtctcaggccttggtcccaga
aaggcatcctcattacagcgtgctgttgtaggagctggtagaatatacagcagaaaagag
attccaatgaatttgggagtccttaagcgtaatgtgttcatgaatgctgctggctttttg
cgggtccgaggcagcggccaagctgctcttggaaatcatgtgttggacttgctagatgat
actagaattcacccagaatcatatgatcttgcacggaaaatggcgaaggatgtctatgca
gaagatgtgggccaggatattaatgatttggatgaagacgcccaggaaatggcaattgag
caagttaggggtagtgtaaatttgaaaagacttgatattgatgcatacagtggaagcatc
gagttgcaccttgggaccagcaaaagagagactctttatgatataaaaatggagttgcta
catgggttcacagattggcgagccccttattcggaaccaactcaggatgaggaattttat
atgatctctggtgaaactccagagactcttgctgaaggaagacttgtgcaagcaacagtt
cgcagagtacaggggcaacgaattttttgtgagcttgaatcgggtttgatgggcttgatt
tcaaaggaagatttctcagatgagcgggactttgaactaactgagagggtagctgagggt
agtatagtcacatgcaaaattaaattcatccggaaggatagacaccaagttatcctaacc
tgcaaaggaagtgacttaaggaacaaccggttgcaaagcaagcaaccaaaggacccatat
tatgcggaagatgaaagcagtctccagaatgatctggagaaagctcgcaaggagaaggag
cttgcaaagaaatcattcaaaccaagaatgatagttcatccccgtttccaaaatgttaca
gctgatgaagctatttcgttccttgctgacaaggaagctggtgaaagcattgtccgccct
agttctaggggtcctcaatatttgacattgactttgaaagtccatgatggagtttatgct
cataaggacattattgaaggtgacaaagaccaaaaggatattactagccttcttcgtctt
gggaaaacactgaaaattggtgaagatacttttgaagacctggatgaggtcatggatagg
tatgttgaccctcttgtagccaaccttagagtgatgcttggttaccgcaaattcaggagg
ggatccaaggcagaagttgatgaagatttgaagcatgagaaggctgcaaaccccatgcgg
atagtatattcttttggggtttcacatgagcacccaggcaccttcattttatcttatata
cgcagcagcaatcctcatcatgaatacattggtctctatccgaagggtttcaagttcagg
tcgaagatgtttgagagtctagataggttagtggcatactttcagaggcatattgatgac
ctgcagcattcttctgttccacctattcgttcagtagctgcaatggttccgttgagaagc
ccagcaagtggtggaggttcagttggcagcggttggggtgggtcaacaaccagcagtggg
gatggttggaggacacgaggtcattccgatagggatagatctgcaacacctgcttcaaga
acaggaagaggtgattacagaaatggaaatgctcgagatgggcatccgagtggattgccg
agaccatatgggaatgaccgaggacgtggtggaaggggaggcagggggcaccgtgatgga
caggattcttttacttccaactggggtcaaagctcagattcgaaggatggtggtggtggt
ggtggtgcttgggggggaagcttcggtggaacaaatgctccaaagtctccttctagaggt
gatgcgcctggaacttggggtagcagtggggcctggggcagcggaggtggcgagtgggag
gctactaaaaacccatcagctcctgatgttggcgatgcaggttgggaggctactaaaaag
ttggacgccttggctgtatctgatccaccccaaggcatgcagaatggtagcaatggcggt
ggtgcaggtggctggggtgcgagcggtggaagatgggctggagatcctgatgtgcctggt
ggatggtga
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integrated database retrieval system
