Nymphaea colorata (blue-petal water lily): 116258879
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Entry
116258879 CDS
T07418
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116258879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116258879
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116258879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
116258879
NCBI-ProteinID:
XP_031492179
LinkDB
All DBs
Position
8:22772524..22783879
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AA seq
913 aa
AA seq
DB search
MEENSDADKAAAMQNLVAGKLAASVSRLSGSSRTLPHGRDFHFYRNFQEFRNPIKELSET
STALLREIGASPLLWGGHPPASAFPSDPDDAYDWLVDVHDDVLERLAMSLDEFWRMKKNM
GGMEREEFEGGFQTVYGKKKKKKEADTAGYLASGGDLEANKTKAPGGRTRMPFHVPSIPR
SQDEFHIWVDNSNEPFNHVWLEKSEDGSRYIHPLEKYSPQDFVDRDVQAIKPILPLPLAD
TPFTLVEDVRLLKALAAKLHDASEFAVDLEHNQYRTFQGLTCLMQISTRSEDFVVDTLKL
RDHIGPHLRDAFSDPSKRKVMHGADRDVLWLQRDFSIYVCNLFDTQQASRLLQLERNSLE
HLLGHFCEVTANKEYQTADWRLRPLPDEMIKYAREDTHYLLYIYDLMRVRLTSTSNVGEN
KNDLLEVYIRSYDICMQLYEKELLTDASYLHIYGVQDADLDAKQLAVVSGLYEWRDKVAR
AEDESTGYVLPNKILLEIAREMPVTSRTLRRIIKSKHTLVEHNLGAVVQVIKSSMENAAA
FESASEQLKNGRMEIVRQLNEETGVSNPESLDAPQDPTNLSLQTIRKGEPFSGQYSSEDR
LPSDSKGLVSSFVATRDAGGINQVASQSPPEKVSNLHSGRLNESTESLPLLKHIDVASIP
VLKKPSRSFGALLGNPLSKRKLGDDSKVHPAGQAHSVVEQIKSSVVLPFHKFAGENERIT
SAPESSMDEVEASPLHVEEPKIDNLADIIPLENSPELSSENSLADKETKHRGWFPPCMGK
TESGRGKDEQIETADVSMSDLSSSFRKCFQSVTPEKLPNSQDERSPSASDDGLKFKPFDY
AAARQRMQLINNNDAPSSEDKECRNGVKDFGNSKNKASQHVRRLAGEDGKRDNRAPRRRQ
AFPASGNRSATFR
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaattccgacgccgacaaagccgccgccatgcagaatctcgttgccggcaag
ctcgcggcgtcggtgtcgcgcctctccggctcatcccggacactccctcatggccgcgac
ttccatttctatcgaaacttccaagagttcaggaaccccatcaaggagctgtcagagacg
tcgacggcccttctcagggagattggcgcgtctccgcttctctggggcggccatcccccg
gcctcggccttcccgtcggacccagacgacgcttatgactggctcgtcgacgtccatgat
gatgtcttggagcggcttgcaatgtctcttgacgagttctggaggatgaagaagaatatg
ggagggatggagagggaggagttcgagggaggttttcagactgtttatgggaagaagaag
aagaagaaggaagctgacacggcggggtatttggcttccggtggcgacttggaggcgaat
aagacgaaggcgcctggaggccgtacacgtatgccgttccatgtccccagtattccgcga
tcgcaagatgaattccatatctgggttgataattcgaacgagccgttcaatcatgtatgg
ttggagaagagcgaggatgggtcgagatacatacatcccttggaaaaatactctccacag
gactttgttgatagagatgttcaagccatcaagccaatattgccacttcctttggcggat
acaccatttacactggttgaggatgttcgtcttttgaaagctttggctgccaagttgcac
gatgccagtgagtttgctgttgatttggaacacaatcagtaccggacatttcaagggctt
acttgcttgatgcaaatatccacaagatcagaggactttgtggttgatactttgaagctg
cgtgatcatattggtcctcatctaagggatgctttttctgatccttccaagaggaaggtc
atgcatggagctgatcgagatgttttatggcttcaaagggacttcagtatatacgtttgc
aatctgtttgacactcaacaggcatcacgtcttttgcaactggagagaaacagtttagag
catctcctgggtcacttctgtgaagtgactgccaacaaagaatatcagactgcggattgg
cgattgaggcctttgcctgacgagatgatcaaatatgccagggaagacacacattatcta
ttatacatatatgacttgatgcgagtgaggttgacatccactagcaatgttggtgaaaat
aagaatgatttattggaagtttacatccgcagctatgacatatgcatgcaactatatgaa
aaggagctcctgacagatgcgtcatatcttcatatatatggggtgcaagatgccgatctt
gatgcaaagcagcttgcagtagtttcgggactctatgaatggagagataaggttgcccgt
gcagaggatgagagtacaggctatgtattgccaaataaaattttgcttgaaatcgccagg
gaaatgcccgtcacttctaggactctgcgaagaataattaaatcaaagcatacacttgtt
gaacataatcttggtgctgttgttcaagtgatcaagagttcaatggaaaatgcagctgct
tttgaaagtgcttctgaacaattgaaaaatgggcgcatggaaattgtacgccagttaaat
gaggagacaggagtatccaaccctgaatcattagatgctccccaggaccctacaaattta
tctcttcaaacaatacgtaaaggtgaaccattttctgggcaatactcgtcggaagataga
ttaccttctgattcaaaggggcttgtatcctcatttgtggcaactcgtgatgctggggga
attaatcaggttgcgagccagagtccacctgagaaggtatcaaatttgcattcagggagg
ttgaatgagagcacggagtcattgccactgctcaagcacatcgatgtggcttccattcct
gtgctaaagaaaccaagccggtcttttggagcattgttaggaaacccattatcaaaaaga
aaattgggagatgattcgaaagtacatcctgcagggcaggcgcattctgtggtagaacaa
atcaaatcttctgtggtccttccattccacaagttcgctggtgaaaatgaacgcattact
tctgcaccggagagcagcatggatgaggttgaagcttcacctcttcacgttgaagaaccc
aaaatcgacaacttggcagatattataccattggaaaattctccagaattgtcatccgaa
aattcattggcggataaagagactaaacacaggggatggtttccaccctgcatggggaag
acagagagtggacgtggcaaagatgaacagattgaaacagcagatgtttccatgtcagat
ttgtcctctagtttcagaaagtgctttcaatctgtcactccagaaaaacttcccaacagc
caagatgagcgctcaccatctgcaagtgatgacggcttaaagtttaagccttttgactat
gctgcagcgaggcaacggatgcagcttatcaataataacgatgctcccagttccgaggat
aaagaatgcagaaatggggtcaaggatttcgggaactctaaaaacaaggccagccagcat
gtgcgtcgactagccggagaagatggaaagagggataatcgagcaccaagacgtaggcaa
gcttttccggcttcgggtaatcggagtgcgacatttaggtag
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