Nymphaea colorata (blue-petal water lily): 116258928
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Entry
116258928 CDS
T07418
Name
(RefSeq) THO complex subunit 5A
KO
K13174
THO complex subunit 5
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116258928
09122 Translation
03013 Nucleocytoplasmic transport
116258928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116258928
03041 Spliceosome [BR:
ncol03041
]
116258928
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116258928
Spliceosome [BR:
ncol03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116258928
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Spindly
UEV
TP_0454_N
Motif
Other DBs
NCBI-GeneID:
116258928
NCBI-ProteinID:
XP_031492285
LinkDB
All DBs
Position
8:16499204..16504593
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AA seq
818 aa
AA seq
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MEEGEVVAMAEEEKGEEEDNKKSAYDLLEEARTSMEEIVARMLFIKKEGRSKTELRELVT
QISLLFINLRQANRTILLEEDRVKSETDSAKAPVDFATLQLHNFLYEKNHYMKAIKACKD
FKSKHPDITLVSEEEFYKSAPEEIKGNQPNGNAHDLMLRRLDFELFQRKELCKQREELEQ
RKRSLQDVIATRKKFLTSLPSHLKSLKKASLPVQQQLGISHTKKLKQHHLAELLPPPLYV
VFSQFMAQKEAFGDNIDLEIVGSIKDAQVIARQQATKDTGGTVNTEEVRLEDDAAEDDDD
VQRRRKRPKKSYSKDNLDNTGAHLPHPLHVILHILDDVGSDAKPRKLVTLKFEYVQKLNV
VFVGTEGPSEACGGNILCNLFPDDTGLELPHQSAKLVTDEAAILKEKKTSCPFKWAQHLA
GIDFLPEVSPMLTDSVTSSDDHPKTAGVLSGLSQYRQQHRVQTVLARIRSRMKAQLALAE
HLDSLQNLKWPELKYKNIPWALHNPLCHLESWSPVGGTTDQVPSIYANEVEASKRMDLGG
VAVPELLKDEVESTREDGELPSLTQLTIPLDNNRTPPSKGSGDEHSRTLNLISKSITPKR
TSNGHMPWKLKVMDPHPELAFGSGSEDDEPMCDELETEMATTNPSSVKKFWKDHGAKEFL
LVLSRNIPNDEKNVQLEAKVKVSMEYPLRPPLFLLNLSDNKTGCDPNASRPHPLRSESYS
GWFNELKALEAEVNVHILKMLPEGHQHDILAHQVHCLAMLFDFLMDQVPLPVRKGTHVVD
VGLCKPVDGMILSRYFRGRDRRRMVSWKDRGCVSGYPC
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggagaagtggtggccatggcggaggaggaaaagggagaggaagaggacaat
aagaaaagcgcctatgatttgttggaggaggcaaggacgtcaatggaggagatcgtcgcg
aggatgctctttatcaagaaggaaggccggtccaaaaccgagcttagggagcttgtcacc
cagatttcccttctcttcatcaatcttcgccaagcaaatcggaccatcctcctagaagag
gaccgtgtgaaatcagaaactgacagcgcaaaggcacccgtggactttgctactttgcag
ttgcacaatttcttgtatgagaaaaatcattacatgaaggccatcaaagcatgcaaagat
ttcaagtcaaagcaccccgatataactttggtgtctgaagaagaattttacaaaagtgca
cctgaggaaattaaagggaaccaaccaaatggaaatgcacatgatttgatgctacggaga
ctggattttgagctctttcagcgaaaggagctctgtaaacagcgggaggaacttgaacag
cgcaagagaagtcttcaggatgtcattgcaacccgtaaaaagttccttacaagtcttccg
tcacatttgaagtctctcaagaaagcatcactaccagtgcagcagcagctaggcatttct
cacactaaaaaactaaagcagcaccacttggctgagttgctgccacctcctttgtacgtg
gtattttctcagtttatggcacaaaaagaggcctttggggataacattgacttggagatt
gtaggaagcatcaaggacgctcaagttattgcacgacaacaggcaaccaaggatactggt
ggcaccgtaaatacagaggaagtgagattggaggatgatgcagcggaggatgatgatgat
gtgcaaaggaggagaaagagacctaaaaaaagctattccaaggacaatctggacaatact
ggagctcatctgcctcatccactacatgtaattcttcatattcttgatgatgtaggttca
gacgccaaacctagaaagcttgtgacactaaagtttgagtacgtgcaaaagttaaatgtt
gtttttgttggaactgagggaccaagcgaagcatgtgggggtaacatattatgtaacctt
tttcctgatgatactggccttgaacttccacatcagtctgcaaagcttgttactgatgaa
gcggccatacttaaagaaaagaaaacatcttgcccatttaagtgggcacaacacttagct
gggatagatttcttgccagaggtgtcacctatgcttactgattctgtaacttcaagtgat
gatcatccaaaaactgctggagttctttctggactttctcaatatcgtcagcaacaccga
gtgcagactgttttagcaaggattcgctctcggatgaaggctcaattggctcttgcggag
catcttgactcattgcagaatcttaaatggccagaattgaaatacaaaaatatcccatgg
gctctgcataatcctctatgtcatttggaaagttggtcacctgtaggaggcactactgac
caggttccttccatctacgccaatgaagttgaagcttcaaaacgcatggaccttggtggg
gttgcagttccagaacttttgaaggatgaagttgagagtacaagggaagatggggagctt
ccatctctaacacagttaacgattcctctagacaataacaggactcctccttcaaagggt
tctggtgatgagcattctaggactctgaacctgatatcgaaaagcattaccccaaagaga
acttcaaacggtcatatgccctggaaactgaaagtaatggatcctcatcccgaacttgct
tttgggagtggcagtgaggacgatgaacccatgtgtgatgaacttgaaacagaaatggcc
acaaccaaccctagttcggtcaaaaaattctggaaggaccatggcgccaaagagttcctc
ctggtcttgagtaggaatataccgaatgatgaaaagaatgtacagttggaagcaaaggtc
aaagtcagtatggagtatcctctcaggcccccacttttcttgttgaatctttccgataat
aaaactggttgtgacccaaatgcatcaagacctcatcctttaagaagtgaaagctactct
ggatggtttaatgagcttaaagctcttgaggctgaggtcaatgtgcacattctgaagatg
cttcctgagggccaccaacatgatatcctggcacaccaagtacattgcctcgcaatgctg
tttgatttcttgatggatcaggtaccattgcctgtcaggaaggggactcacgtggtagat
gttggattatgcaagcctgtcgatggcatgatcctatcaaggtatttcagaggaagagac
cggaggaggatggtttcatggaaagacagaggatgcgtttcaggctacccttgctag
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