Nymphaea colorata (blue-petal water lily): 116258974
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Entry
116258974 CDS
T07418
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116258974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116258974
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116258974
Spliceosome [BR:
ncol03041
]
Complex C
Other components
Step II factors
116258974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
Flavi_DEAD
ResIII
AAA_24
T2SSE
nSTAND3
AAA_16
ATPase
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
116258974
NCBI-ProteinID:
XP_031492382
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All DBs
Position
8:13893228..13916304
Genome browser
AA seq
1317 aa
AA seq
DB search
MAEGKGDFIDVNATKAVLEPEKLIKGGLYVPGKERVMFRPPPERKSILGLDLRAREQRES
KTGDGFKIPKPKNVTAMSLADDEEKVGPASAEEGSLHHPQAKRNHIHRSYRGSHAERSSH
PESYEAEDGDGDSSEKGGAEEHQHPRVRQVFHEPADFQGVQIGWCTYLSPSWIWPICWFW
TLATSSSMRSSIDSLRSTKNYRMDDSPSNKGFTPRKGDYEGEQTGKRELHRRYSHEDKYS
RRHGGKRSRDGRSSSKTSAKSDWDDGRWEWADTPRRDKSVTPRHHLHSPSPMFAGASPDA
RLVSPWVGSNTPYASRPSASPWDHVAPSPVPVRASGSSMRVTSSRNGGRSHKTMLTSENL
DFGHREADQSSLDGEQSVEAVERMRVEMEYAERDADRAWYDREESGAMFDAESSAFILDD
ETSFRKEREMPKKLIRKDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEF
EDEDERKVILLVHDTKPPFLDGRIVFTKQAEPVLPLKDPTSDMAIISRKGSALVRTVHEK
QSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGEEGEVDFKEGAKFASHIKDKG
EAVSDFAKSKSITEQRQYLPIYSVRDELLQVVRENQVIVVVGETGSGKTTQLTQYLHEGG
YTTNGVIGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPHTVIKYMTDGVL
LRETLKDSDLDKYRVIIMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFS
NFFGSVPIYHIPGRTFPVNILYSKTPCEDYVEAAVKQAMTVHITCPPGDILIFMTGQDEI
EATCYELAERMEQLSSNAKKAAPKLSILPIYSQLPSDLQAKIFQKAEDGTRKCVVATNIA
ETSLTVDGILYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRL
YTETAYQNEMLPNPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLW
VLGALSNTGKLTDLGLKMVEFPLDPPLAKMLLKGEELECINEVLTIVSMLSVPSVFFRPK
DRAEESDAAREKFFVPESDHLTLLNVYQQWKANDYRGDWCNDHFLHVKGLRKAREVRSQL
LDILKTLKVPLTSCGPDWDVVRKAICSAYFHNAARLKGIGEYVNCRSGMPCHLHPSSALY
GLGYTPDYVVYHELILTTKEYMQCVTAVEPQWLAELGPMFFSVKESDTSMLEHKKKQKEE
KTSMEEEMEELRRMQLEKEKEDMEREKEKRAKYQQKISMPGTKQSSTYLRPPKRLGL
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggaaaaggagactttattgatgttaatgccacaaaagctgtcttggagcct
gagaagctcattaagggtggactatatgttcctgggaaggaaagggtgatgttcagacct
cctcctgaaaggaaatccattttgggacttgatttgagggctcgtgaacaaagggaatca
aagactggcgatggatttaagattcctaaaccaaagaatgttactgccatgtcactggca
gatgatgaagagaaagttggtcctgcaagtgcagaggagggctcactccatcatcctcaa
gcaaagcgtaatcacattcacagaagttataggggttcacatgctgaaaggtcatcacat
ccagaaagttatgaagcagaggatggtgatggggattcatctgagaagggtggtgcagaa
gaacatcagcatccaagagttaggcaggtgttccacgaaccggcagacttccagggtgtg
caaattgggtggtgtacatacctaagtccatcctggatctggcccatttgttggttctgg
acgcttgcaacttcttccagcatgcggtcttcaatcgactcattgaggagtacaaaaaat
tacaggatggatgactctcctagcaacaaaggattcaccccaagaaaaggtgattatgaa
ggagaacaaacaggtaaaagagaattacatagaagatatagccatgaagataaatattcc
agaagacatggggggaaaagaagtagagatggacgttcctcaagcaagacatctgccaag
tctgattgggatgatgggagatgggaatgggcggatactcctcgtagggacaagtctgtc
acgcctaggcatcatcttcattcaccttctccaatgtttgctggagcttctcctgatgca
aggctggtctcaccttgggttggaagtaatacaccttatgcatcaagaccatctgcttcg
ccttgggatcatgtagctccttctccagttcctgtacgtgcatctggatcctccatgaga
gtcaccagctctcgtaatggtggaaggtcacataaaactatgttaacttcagaaaatttg
gattttggacacagggaagctgatcaaagttcacttgatggagaacaaagtgttgaggct
gttgaaagaatgcgcgtagagatggaatatgctgagcgagatgctgatcgtgcatggtat
gatagggaagaaagtggagcaatgtttgatgctgaaagttctgcattcattcttgatgat
gagacatcatttagaaaggagcgggagatgcccaagaaattgataagaaaagatggaaca
aaaatgacacttgcacaaagcaaaaaattgtcccagctcactgcagataatgcacagtgg
gaggatcgacaacttttaaggtctggtgctgttagaggaacagaggtacaaactgaattt
gaagatgaagatgaacggaaagttatacttcttgttcatgatactaaacctccattcttg
gatggccggattgtcttcacaaagcaagcagagcccgttttgccattgaaggatcccaca
tccgacatggcaataatatctaggaagggctctgctcttgtaaggacggtccatgagaag
cagagtatgaataaatcacgtcaacggttctgggaacttgctgggtccaaacttggtgat
attcttggtgttgagaagacagcagaacagattgatgcagatactgctgcagttggggaa
gaaggtgaagttgactttaaggaaggagcaaaatttgcttcacacatcaaagataaaggt
gaagctgtaagcgattttgccaagtcaaaatcaataacagaacaacggcagtatcttcca
atatattcagtgcgtgatgagttgctccaggtggttcgtgagaatcaggtgatagttgtt
gttggagagactgggtctgggaaaacaactcagctgacacagtatcttcatgaaggtgga
tacacaacaaatggagtaattggttgtacccaaccaaggcgtgtagcagcaatgagtgtt
gcaaagcgtgttagtgaggaaatggaaactgaattaggggataaagttggttatgctatt
cgttttgaagatgtgactgggccacatactgtaattaagtatatgactgatggggtttta
ctgcgtgagacactaaaggattcagatcttgacaaataccgagtgataataatggatgaa
gctcatgaaagatcactaagtactgatgtactgtttggtatattgaagaaagtggttgca
cggcgtcgtgatttcaagcttattgtaacatctgcgacattgaatgcacagaagttctct
aacttctttggaagtgtgccgatttaccacattcctgggaggacatttcctgtgaacatc
ttgtacagtaaaactccatgtgaagactatgtagaagcggctgtgaagcaggccatgact
gttcacatcacgtgtcctcctggtgacatccttatatttatgactggccaggatgaaatt
gaagcaacctgctatgagcttgctgagcgcatggagcagctttcctctaatgcaaagaag
gctgctcctaaactctccattcttcctatttattctcaactgccatcagatctccaagct
aaaatttttcagaaagcagaagatggtacccgcaagtgtgttgttgcaacaaacattgct
gagacttctcttactgttgatggtattttatatgttatagatacagggtatgggaaaatg
aaggtctacaatcctcggatgggtatggatgcacttcaagtgtttccagttagccgggct
gctgctgatcaaagggcaggccgtgcagggcgaacagggccaggcacatgttacagattg
tacactgagacagcctatcagaatgaaatgctaccaaatccagtgcctgagattcagcga
actaatcttgggaatgtggttctactgctcaagtctttgaagattgataaccttcttgat
tttgatttcatggaccctccacctcaagagaacatcctcaactccatgtaccagttgtgg
gtgttgggtgctcttagcaacactggcaagttgacagatcttgggctgaaaatggtggaa
ttcccgctggatccgcccctggcaaagatgctgttgaaaggggaggaactagagtgcata
aatgaggttctaactattgtctcaatgctctcagtgccatcggtctttttcaggcccaag
gacagggctgaggagagtgatgctgcaagggagaagttctttgtgccggaatctgaccac
ctgacgctactaaatgtatatcaacaatggaaggcaaatgactataggggtgactggtgt
aacgatcactttcttcatgtgaaaggacttagaaaggcaagagaggtgaggtctcagctg
ttggacatactaaagacactcaaggtaccgctgacatcatgtggaccggattgggatgtt
gtgcggaaggctatttgctctgcatattttcataatgctgcaagattgaagggcataggc
gagtatgtcaattgcagaagtggaatgccttgccatttgcacccaagtagcgcactttat
ggacttggatatactccggattatgtggtgtaccacgagctgattctgacaacgaaggag
tacatgcaatgtgttaccgcagtggagccacaatggttagcggagcttgggcccatgttc
ttctctgtgaaagagtccgatacttccatgttggagcacaagaagaagcaaaaggaggaa
aagacatcgatggaggaagagatggaggaacttaggaggatgcagctagagaaggagaag
gaagacatggagagggagaaggaaaagcgagcaaaataccaacagaaaatatcgatgccc
gggacgaaacagtcatctacatatctaagaccacccaaaagacttggtctttag
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