Nymphaea colorata (blue-petal water lily): 116259080
Help
Entry
116259080 CDS
T07418
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116259080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116259080
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
116259080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
DZR_2
zf-C3HC4_3
ELL
DUF1258
Motif
Other DBs
NCBI-GeneID:
116259080
NCBI-ProteinID:
XP_031492556
LinkDB
All DBs
Position
8:complement(22759129..22768535)
Genome browser
AA seq
551 aa
AA seq
DB search
MSMDLILKPSCGGCGSTSDLYGSNCKHTTLCLSCGKTMAETRSKCRECGVPITKLIREYN
VRASSSADKNFYIGRFPTGLPVFSRRKNAEVRWSLQKEGLQGRQMTETLREKLKNKPWLL
EDETGQYQYQGQLEGAQQATYYLLVLQGKEFTAIPAGSWFNFNKVAQYKQLTLEEAEEKM
KNRRRTADGYERWMMKAANNGAAAFGEVEKLGSSRDGDGGVGGGGGGSASGGGGRRKKGN
EEEEDNAVGSDKGEEDEEDEEDRKNRLGLNKRNADDDEEGPRGGDLDMDDDDIEKGDDWE
HEEIFTDDDEAVGNDPEEREDLDPEIPAPPEIKQDDEDENEGEEDEEGLSKSGKELKKLL
GRAGGLNESDAEEEEEEEEEDESGISPVLAPKQKDTLKEEPDVTPTKPVASGSTRGTPSS
AKSSKAKRKSGSDDVKPAGSGTAKKLKTENDTRQAASAKDETPASRTNAPQKVPAPSAAK
SGSAPATGSVSEEEIRAVLLQVAPVTTQDLVAKFKARLKTPEDKSSFAAILKKISRIQKT
NGANFVVLREK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggacctgattctgaagccgtcgtgcggcgggtgcgggtcgacctctgacctc
tatggaagcaactgcaagcacacgaccctctgcctctcatgcggcaaaaccatggcggag
acccgatccaagtgtcgcgagtgcggcgtccccatcaccaagctcattagggaatacaat
gttagggcaagcagcagcgctgacaagaatttctacattggccggtttccgacgggattg
cccgtcttctcgaggagaaagaacgctgaggttagatggtcgctacagaaagaagggctt
caaggacgccagatgaccgaaaccttgcgggagaaactgaagaataaaccatggcttcta
gaggacgaaactggccaatatcaatatcaaggtcagctagagggtgcacaacaagctact
tattatttgctagttttacagggaaaggagtttacggccatccctgcaggctcttggttc
aattttaataaagtcgctcaatataagcaacttacactggaagaagctgaagaaaagatg
aaaaataggaggaggacggcagatggctatgagagatggatgatgaaagctgcaaacaat
ggagctgcagcttttggtgaagtggagaagttaggatctagtcgtgatggtgatggtggt
gttggcggcggcggtggtggcagtgccagtggcggtggagggcgtcgtaagaaaggcaat
gaagaagaagaagataatgcagtaggatctgataagggggaggaagatgaggaggacgaa
gaggacaggaaaaataggttgggactgaacaaaaggaatgcagatgatgacgaggaaggc
cctagagggggtgatcttgatatggatgatgatgatattgaaaaaggtgatgactgggaa
catgaagaaatatttacggatgatgatgaggctgttggtaatgatcctgaggaacgagaa
gatttagaccctgaaattccagcgcctcctgagattaagcaggatgacgaggatgagaat
gagggcgaggaagatgaagaaggtctgagcaaatctgggaaagagttgaagaagcttctt
ggccgagcaggtggactaaatgagtcagatgctgaggaggaggaggaggaggaagaggag
gatgagtctggcatatccccagtcttagctcctaagcagaaggatactttaaaggaggag
cctgatgtcacacctacaaaaccagttgcttctggatctacacgtggcactccttcttca
gcaaagtcttcaaaagcaaaaagaaaatctggtagcgatgatgtgaagcctgctggttct
ggtacagcaaagaagctgaaaactgagaatgacacgagacaagctgcatctgccaaagat
gagactccggcttcaagaactaatgctccacaaaaggttcctgcaccatctgctgcaaaa
agtggaagtgcaccagctacaggatccgttagcgaagaagagatcagggctgtgctgttg
caggttgctccagtaacaacacaagatcttgtggccaaattcaaggcaagactaaagacg
cctgaggataagtcatcttttgctgcgatcctgaagaaaatctccagaatacagaagaca
aatggggccaatttcgttgtattgagagagaaatga
DBGET
integrated database retrieval system
