Nymphaea colorata (blue-petal water lily): 116259728
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Entry
116259728 CDS
T07418
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116259728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116259728
Spliceosome [BR:
ncol03041
]
Complex A
U1 snRNP components
U1 related factors
116259728
Complex B
116259728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
116259728
NCBI-ProteinID:
XP_031493499
LinkDB
All DBs
Position
8:complement(19592772..19616670)
Genome browser
AA seq
1049 aa
AA seq
DB search
MANNPQLSGSQPPRPPMVGSTGPPQNFASPMSLQFRPVIPPPQSQQFMPSAPQQFRPVGQ
GIPPPNNMMPSPVQAQQNPYGQPMQQFLPTPGPPGQVAPSSQGVPGPYAPMPVATALSQP
QQTHQPLGAHHAGFGGPGAPLSSSYTFATPSSASQPQNNINLPSQYQPVPQVPTPSISGQ
PWLPSGVTSGQVVGPPLQTAQQAVSSSTAMLSTSQPSSSLQSSSDWQEHTSADGKRYYYN
KKTKQSSWEKPLELMTPIERADASTVWKEFTTAEGRKYYYNKVTKQSKWTIPEELKLARE
QADKAVAQVVNVDTSNVASAAQITPTVSTSDMPANVVASPAVPSPIIATSGVASSPVLVM
PTISTSAVILSNPPSMPSVSPAVVSTPVGVSSSPGLPSFNSSTFVATHAASAASGAAVST
EMSSTIPVKITADAAQAGDITSSQDLEEAKRGMPVTGKINVTPVSEEKAVDEEPLVYATK
QEAKNAFKELLESAHVESDWTWEQAMRVIINDKRYGALRTLGERKQAFNEYLGQRKKQEA
EEKRIKQKKAKEDFTKMLEECKELTSSTRWSKAVTMFEDDERFHAVERAREREDLYESHL
VELAKKERAKAAEEHRKNIMEYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRL
EIFQEYIRDLEKEEEEQRKLQKEQTRRAERKNRDEFRKLMEEHVTAGILNVRTHWRDYCM
QVKDLPAYLAVASNTSGSTPKDLFEDVAEDLEKQYHDDKARIKDALKMAKVTMTSNWSFE
DFKDAILQDGNLSRVSETNLKIVFEELLERLKEKEEKEARKRQKLADDFTDLLHSVKEIT
ALSKWDDCKSLLEDSQQFRSISDDSFRREIFEEYVAHLLEKAKEKERKREEEKAKKKEKE
EKEKRKEKERKEKEEKKEREDRKEKERDREKEKAKERSRRDETEGESADIGNSHGHREDR
KKEKDRRHRKRHQSGGDDATSDKEENEESRKSRRHSGDRKKSSRKHTYETDSDSESRHKR
HKRDRDGSRRNGVYEELEDGEVGEDGEIN
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataacccccaactatctggctcacagccacctaggcccccgatggtgggatcg
actggtccacctcagaactttgcttcaccaatgtccttgcaatttaggcctgttattcca
ccaccacaaagtcaacagtttatgccgtcagcaccccagcagttcaggcctgtcggccaa
ggtattccaccacctaacaatatgatgccttctcctgtacaagcacaacagaacccgtat
ggacaaccaatgcaacaattcctccctacaccaggccccccaggtcaagttgctccttct
tcacaaggagttccagggccttatgctcccatgcctgttgcaactgcattatcccagcct
cagcaaactcatcagcctttgggcgcccatcatgctggttttggaggtcctggagcacca
ttatcgtcgtcatatacatttgcaacaccatcttctgcaagccagcctcagaacaatatt
aatctaccatcacaatatcaacctgtgccccaagttcctacgccatctatttcaggacaa
ccctggttgccatctggagtaacaagtggacaagttgttggaccaccactgcaaactgcc
cagcaggctgtatcatcttccactgctatgttgtcaaccagtcagcctagttctagtctc
cagtcttcctcagattggcaggaacacacttctgccgatgggaagaggtattattacaat
aaaaagactaagcagtctagttgggagaaacctttagagttgatgacccccattgagagg
gctgatgcatcaactgtctggaaagaatttactactgctgaggggagaaagtactactat
aacaaggtcaccaaacagtctaaatggacaataccagaagaacttaagcttgcacgggag
caggctgataaggcagttgcccaggtagtgaatgtggatacgtcaaatgtggcttcagca
gctcaaatcactcctaccgtatctacctcagatatgccagctaatgttgttgctagtcct
gctgtaccatcccccatcattgcaacatctggagttgcatcaagtcctgttctagttatg
ccaactattagcacttcagcagtaatcctgtctaatccaccatctatgccttcagtctct
cctgctgttgtttctactcctgtaggtgtttcatcttctccaggattaccaagtttcaat
tcctcaacttttgttgccacccatgctgcttctgctgcctctggtgctgcagtttccaca
gagatgtcttccactataccagtgaaaatcactgctgatgctgctcaagctggtgatata
acatcatcccaggatttggaggaggcaaaacgaggaatgcctgttactgggaagatcaat
gtgacaccagtgtccgaggagaaggctgttgatgaagaacctttggtttatgctacaaag
caggaagcaaagaatgcatttaaggagctcttggaatctgcacatgttgaatctgattgg
acctgggagcaggccatgcgggtgataataaatgacaagcggtatggtgctcttagaaca
cttggagagaggaagcaggctttcaatgaatacctgggacaaaggaaaaagcaagaagct
gaggaaaaacgcattaagcagaaaaaagctaaagaagattttacaaagatgttagaagaa
tgcaaggaactcacttcatccactcggtggagcaaagcagtcaccatgtttgaggatgat
gaacggtttcatgctgttgaacgtgcaagagagcgtgaagatctttacgagagtcatctt
gttgaacttgcaaagaaggaacgtgctaaagcagctgaggagcataggaagaatataatg
gaatacagagcatttttagaatcttgtgactttataaaggccaatagccagtggcgaaaa
gttcaagatcgtcttgaagatgatgaacgatgttcacgacttgaaaaaattgatcgcctg
gaaattttccaggagtatataagagatttggaaaaggaagaagaagagcaacggaaattg
caaaaggaacaaaccagaagagcagagcgtaaaaatcgtgatgaattccgtaaattaatg
gaagaacatgttactgctggaattttaaatgttagaactcattggagggattattgcatg
caggttaaagatttacctgcatacctggcagttgcttcaaatacctctgggtctacgcca
aaagacttgtttgaagatgtggccgaggatcttgaaaaacagtatcatgatgacaaggca
cggatcaaggatgcattgaagatggcaaaggttactatgacatcaaattggtcttttgaa
gatttcaaggatgctattttgcaagacggaaacctttcacgagtatcagagacaaatttg
aagattgtatttgaggagttgttggaaagactgaaggagaaagaggagaaggaagctagg
aagcggcaaaagctggcagatgactttactgatctcttgcattctgtaaaggaaataaca
gcattgtctaaatgggacgactgcaaatcacttttggaagatagccaacagtttaggtcc
attagtgatgatagtttcagaagggagatttttgaggaatacgtagctcacttgttggaa
aaggctaaagagaaggagcggaagcgagaggaagaaaaggcaaaaaagaaagagaaggaa
gaaaaagagaagaggaaggagaaggaacggaaagaaaaagaggagaaaaaggaaagggaa
gatagaaaagaaaaggagagggaccgtgagaaagagaaggcaaaagaacgatctcgaaga
gatgagacggaaggtgaaagtgctgatataggtaacagccatggtcatagagaggacagg
aagaaggaaaaggacagaaggcaccgaaaacggcaccaaagtggaggtgatgatgcaact
tctgataaggaggagaatgaagaatccagaaaatccaggaggcattcgggtgatcgcaag
aaatcatcaagaaagcacacgtatgaaacggactcggatagcgaaagcaggcacaaaagg
cacaaacgagatcgggatggatcacgtagaaatggtgtgtacgaggagcttgaagatggg
gaagtaggagaggatggtgaaattaattga
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