Nymphaea colorata (blue-petal water lily): 116259865
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Entry
116259865 CDS
T07418
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116259865
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116259865
Spliceosome [BR:
ncol03041
]
Complex C
Other components
Complex C specific factors
116259865
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
AAA_7
ResIII
Cas3-like_C_2
AAA_23
AAA_11
nSTAND3
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
116259865
NCBI-ProteinID:
XP_031493684
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All DBs
Position
9:18075581..18103432
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AA seq
701 aa
AA seq
DB search
MSQFWKPGSEKPTSRLVEDEDGGVLYVRHPTSSSSHSGFGHASLEKQRKRLPVYEYRTAI
LYLVENHATTVIVGETGSGKTTQIPQYLQEAGWASDGRVIACTQPRRLAVQVVASRVAEE
MGVKLGEEVGYTIRFEDMSKPGVTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSL
STDMLMGLLKKIQNRRPELRLVISSATIEAKSISNFFSYSRRKRHDPESQDVVPSKQPAI
LSVEGRGYEVKVYFLQEPTSNYLHEAVSTVLSIDEKEPMGDILVFLTGQDDIEAAVQLLN
EECQNLGKRSSGLIILPLYAGLSRADQDMIFSPTPRGKRKVVISTNIAETSLTLEGVVYV
VDSGFSKQRYYNPISDIENLVVAPISKASARQRAGRAGRVCPGKCYRLYTEEYFNKEMVA
HGIPEMQRSNLVSCVMQLKALGIDNILGFDWLASPPPEAMIRALEVLYSLGILDDDAKLT
VPLGFQVAEIPLDPMVGTMILSAHSLGCLEEIIIIAAVLSVQSIWASGRGAQKELDDAKL
RFAVAEGDHVTFLNIYQGFIRSGKSAQWCYKNFINYNSMKKVIDVREQLIRLVKRLGLVI
QSCEKDTEVMRRAITSGFFAHACRLETYGQEGVYKTIRGSQEVYIHPSSVLFRVNPKWVI
YHEIVSTEKNYMRNVISIDPSWLTEIAPHFYQVQKPNPVIH
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttctggaagccaggctctgagaagccgacttctcgtctcgtcgaggatgaa
gacggaggtgtcctctacgtccgccaccctacgtcttcttcttctcactccggtttcggg
catgcgagtctggagaagcagagaaagaggctccctgtctatgagtatcggacggcaatc
ctttatctggtcgagaatcacgctaccaccgtcatcgttggggagactggcagcggcaaa
accactcagattcctcagtatcttcaagaagctggttgggcatccgatggacgtgtaata
gcttgcactcagcctaggcgtttggctgttcaggttgttgcttcaagggtagctgaggaa
atgggtgtcaagctcggagaggaggttggttacacaattcgttttgaggacatgtcaaag
ccgggtgttaccatgatcaagtttctgacggatggtgtgctgctaagggagatgatggac
gatcctcttctaaccaaatacagtgtcatcatggtggatgaagcacatgaaaggagcctc
tctacggacatgttaatggggctcttgaaaaagatccaaaatcgtcgacctgagctgcgg
ttggtcatttcatctgctacaattgaggcaaaatccatctcgaatttcttttcttacagt
agaagaaagcgacatgatcctgaaagccaagatgttgtacccagtaagcaacctgctatt
ctctctgtggagggacgaggctatgaagtaaaagtgtattttctccaggagcctacgtcc
aattatctgcatgaggcagtttcaactgtcttatccattgatgagaaggaaccgatgggc
gatattctagtcttcctcactggtcaagatgatattgaggccgcagttcagttacttaat
gaagaatgtcaaaatttagggaaaagatcttcaggacttatcattttgcctctatatgct
ggactttcacgtgctgaccaggacatgatattttctcccactcctaggggaaagcgtaaa
gtagtgatatcaacaaatattgcagaaacttcattaacacttgagggagtggtgtatgtt
gtggacagtgggttctcaaaacagcgttattacaatccgatttctgacattgaaaacttg
gttgtggcaccaatttctaaagcatctgcaaggcagagggctggaagggctggaagagtg
tgtccaggcaaatgttacaggttatataccgaagaatattttaataaagaaatggtagca
catgggattccagagatgcaaaggtccaatcttgtttcatgtgtcatgcaactaaaggct
ctgggtatcgacaacatcttggggtttgattggcttgcttcaccaccaccagaggccatg
attagagcacttgaggttctttactcactaggcattcttgatgatgatgcaaaacttaca
gtaccgctggggtttcaagttgcagaaattcccttggaccctatggttggtacaatgatc
ttatcagcacactcactaggctgcttggaggagataatcataattgctgctgttctctcc
gttcagtctatctgggcttctggtagaggggcacaaaaagagttggatgatgcaaaacta
cgatttgctgttgcagagggtgaccatgttactttccttaatatataccagggattcata
cgatctggaaaatctgctcaatggtgctacaagaactttataaattataattccatgaaa
aaggttatagatgttagagagcaattaatcaggctagtgaagcgacttggcttagtcatc
cagtcatgtgagaaagatacagaggttatgagaagggcgattacttctggcttttttgct
catgcttgccgcttggagacgtatggtcaagaaggagtttacaaaactatcaggggctcg
caagaggtttatatccacccatcctctgttcttttcagggtcaatccaaagtgggtgatt
tatcatgaaattgtttccactgaaaaaaactacatgcgaaatgttatttcaattgatcct
tcttggcttacagaaattgctccacacttttatcaagtacagaaaccaaaccccgtaatt
cattga
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