Nymphaea colorata (blue-petal water lily): 116259920
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Entry
116259920 CDS
T07418
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116259920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116259920
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116259920
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116259920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
116259920
NCBI-ProteinID:
XP_031493780
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All DBs
Position
9:17599523..17604345
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AA seq
324 aa
AA seq
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MRDLELSLNQGQRVRLKKALQQLQDCSSKVQFSAPVTVADTIPVNQEDGVLKGHGTSELN
GEVVATVCGLVERVNKLVLVRPFRSRYKPEIGDIIVGRVIEVAPKRWKLEINFSQDAVLM
LSSMNLPDGIQRRRTALDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSEKYGKLEKG
LLLTVSPYLVKRRKQHFHFLEQFGVDLILGCNGFIWVGGHAGSEKDYTIEEEHSRSDQNN
KSCESSATVEDIPLTVRENICRIANAVRILSELGFYISMEVIMDAVEASIGWNFEIRDML
GAEFYVRIAEREAQRRKSQSKKKI
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagggatctcgaattgtcactgaaccagggccaaagggtgaggctgaagaaggcgctt
cagcagcttcaggattgctcttcaaaggtccaattctccgctcccgtgaccgttgcggat
accatccccgtgaaccaggaagacggcgttctcaagggccatgggacatctgagcttaac
ggtgaagttgtggcgactgtatgtggtctggttgaacgtgtcaacaagctggtcctggtt
cgtcctttccgctccaggtacaagcctgaaattggagatattattgtaggacgtgtcatt
gaggttgctcccaagcgctggaagttagaaataaatttcagccaagatgcagttttaatg
ctttcctccatgaatttgccagatggtatccagaggcggcgcacagctctggacgaactt
aacatgcgtactatcttcgaggagaatgatgtcatctgtgctgaagttcgtggtttccag
catgatggaagtttgcatcttcaggcacgaagcgagaaatatggaaagctggagaaaggc
ttgttgctgacagtctcaccttacttagttaagcgccgtaaacagcattttcacttcctt
gagcagtttggtgtagacttgattcttggttgcaatggattcatatgggttggtgggcat
gctggcagcgagaaggattacactattgaagaagaacattccagatcagatcaaaataac
aaatcttgtgaaagctcagcaactgttgaggatattcccctgacggtacgagaaaatatt
tgtaggatcgcaaatgcagtacgcatattgtctgagctaggtttctacatctctatggaa
gtgataatggatgctgttgaagcaagcattggctggaattttgagataagagatatgctt
ggtgctgaattttatgtgagaattgcggagagagaagctcaaagaagaaaatcccagtcc
aaaaagaagatatga
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integrated database retrieval system
