Nymphaea colorata (blue-petal water lily): 116260382
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Entry
116260382 CDS
T07418
Name
(RefSeq) uncharacterized protein LOC116260382 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116260382
09122 Translation
03013 Nucleocytoplasmic transport
116260382
03015 mRNA surveillance pathway
116260382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116260382
03041 Spliceosome [BR:
ncol03041
]
116260382
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116260382
Spliceosome [BR:
ncol03041
]
Complex C
Other components
EJC/TREX
116260382
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
116260382
NCBI-ProteinID:
XP_031494548
LinkDB
All DBs
Position
9:complement(9086038..9094793)
Genome browser
AA seq
688 aa
AA seq
DB search
MSTNSAPWDRPLDQWKVIELKDELKRRKLITRGLKEELVRRLHEALRKEAAEATDMGNGF
NLQDEPLVTSKDVEVKDDGHAKPKDGGEPLVKDVQNENVHMVDVNDPYASVVAQDDRVGN
LNDNKWPDSDDKRAGETAGLTDCGLGAEEDPASVITNPSVDAKIEASIPEDVKPLDSTTI
SQVSESVPDCKDFSAPERKDEAPITEESEIASEPTPQVSESVHQVVKCESVSTDSVSIKQ
ENALKDNLITDNVSVEPEVVKKEVPQSLSNAGDHGASVTDVEGGVESAAKCGDITHDMDV
DSFGKGDADNYAHECVVEEPVQEKVTESKSSDITLDDDGGDKDFKIQESIAIDEKIESET
RTVQINMEEKYEFIESIENSTQLAEKRKAGTDVEVEHDPPKRQRKWNSDHELAKVSAARP
PRLDKENLPDATQTSPLAASNANLLSPIDKAQGVKLARTDSNIDSEAPKGRVVPPPQRSP
TASLRIDKFLRPFTLKAVQELLAKTGTIRSFWMDHIKTHCYVTYSSVDEAVATRDAVYNL
QWPPNGGRLLTAEYVEPEDVKLRVEGGPQSPPAVSQPTVPPPQSNQVNPHASVKPPVPPV
VPPSSKQQLPPPPPLTPQARPQHVGRERLPPPPPPKKIEAPVLTLDDLFKKTRTTPRIYY
LPLSEEQVAAKLASTGADGRDKAADSRL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaattctgccccttgggatcgaccacttgatcaatggaaggtcattgaattg
aaggatgagcttaagaggcggaagctgataacaagaggcctgaaggaggaacttgtgagg
cggctgcatgaagcactgagaaaagaggctgctgaagccactgatatgggtaatggattc
aatttgcaagatgaaccattggttacgagcaaggatgtagaggttaaggatgacggtcat
gcaaagcctaaagatggtggagaacctcttgtgaaggacgtccagaacgaaaatgtgcat
atggtcgatgtgaatgatccttatgcctcagttgttgctcaagatgatagggtgggaaat
ctcaatgacaataaatggcctgattcagatgacaaaagggcaggtgagactgctgggtta
actgactgcggtcttggagccgaggaggatccagcatcagtgattactaatcccagtgta
gatgcaaaaattgaagcttcaattcctgaggacgtgaagccccttgattcaacaactatc
tcccaggtatctgagagtgtgccggactgtaaagacttttctgctccagaacgaaaggat
gaagctccaataactgaggaaagcgaaatcgcctccgaacccactccccaggtatctgag
agtgttcaccaagttgtaaagtgtgagtctgtttctactgattctgtgtcaattaaacaa
gagaacgcattaaaggataatttgattactgataatgtctctgtagaaccagaggttgtt
aagaaagaggtgccacagtctttatccaatgcaggtgatcatggtgcttctgttacggat
gttgaaggtggtgtagaaagtgctgccaaatgtggagacatcactcatgatatggatgtt
gattcgtttgggaaaggtgatgcagacaattatgctcatgaatgtgttgttgaagagcca
gtacaagagaaagtgactgagagtaagagttctgatattactttggatgatgatggtgga
gataaagatttcaaaattcaagaatctattgcaatcgatgaaaaaatagaatctgaaact
agaactgttcagattaacatggaagagaagtatgagtttatcgaatccattgaaaactca
acacagcttgcagagaagaggaaagctggtactgatgttgaagtagaacatgatcctccc
aaacgacagcggaaatggaacagtgatcatgaattggctaaggtttctgctgcaagacca
cctagactggacaaggaaaaccttcccgatgctactcagacttctcctcttgctgcatct
aatgccaatcttttgtcaccaatcgataaagcacaaggtgttaagcttgctagaactgac
tctaatattgattctgaagcacccaaggggcgagttgttcctccacctcagagatcacct
acggcttctttgagaattgataaatttttgcgcccattcacattgaaggctgtacaagaa
cttcttgccaagactgggacaatccggagtttctggatggatcatattaagacccactgc
tacgtgacgtattcttctgtcgatgaagcagttgcaaccagagatgctgtctacaatctt
caatggcctcctaatggtggacggttactgactgctgaatatgttgagcctgaagatgtc
aagcttcgggttgaaggtgggcctcagtcaccacctgctgttagtcagccaacagtacct
cctcctcagtccaatcaagtgaatccccatgcatctgtgaaaccccctgttcctcctgtt
gtgccaccttcatcaaagcagcagctgccacctccaccaccccttacacctcaggcccga
ccacagcatgtgggccgtgaacggctgccaccaccacctccacctaagaagattgaggct
ccagtccttacacttgatgacctgtttaagaaaacacgaaccactcctcgaatatactat
ttgcctctatcagaagagcaagttgctgcaaaattagccagtactggtgcagatggacgt
gacaaggctgcagattctcggctttga
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