Nymphaea colorata (blue-petal water lily): 116260820
Help
Entry
116260820 CDS
T07418
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116260820
09124 Replication and repair
03420 Nucleotide excision repair
116260820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116260820
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116260820
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116260820
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116260820
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116260820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116260820
NCBI-ProteinID:
XP_031495189
LinkDB
All DBs
Position
9:23079995..23098005
Genome browser
AA seq
769 aa
AA seq
DB search
MATNVDKGRPSKKIKFSTRDDRRDFVGDADGGGDYGDDMYDGHPRGEPEANKKDFSKLEL
KPDHVNRPLWVCVDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV
SVGLETSTIINVLEKLSKTRLPKDIIDFVYASTSNYGKVKLVLKKNRYFVESPFPEVLKK
LLHDEVISRARKFSSEDDTFMVSKALGGIEGGHEELLDAVDLAAATEEKETHSFEIDPAQ
VENVKQRCLPNALNYPMLEEYDFRNDNVNPDLNMELKPQAQPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS
DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISITKSHCKLGLTATLLREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLRKENSKKKQALYVMNPNKFRACEFLIRFHEQERGDKIIVFADNLFALTEY
AMKLRKPMIYGATSHSERTKILSAFKHSPDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGRPQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPPGSGSELGFHRLDEQLALLSKVLSAGDDVVGLEQLEEDADDITLQTRRSA
GSLSAMSGANKMVYMEYNTGKGKLVAHGQAKSKPKDPAKRHVLFKRRYG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaatgtggacaagggtcggcccagcaagaagataaagttctctaccagagac
gatcgcagagattttgttggtgacgctgacggtggcggcgattatggggacgatatgtat
gatggtcatccgcgcggagaaccggaggctaacaagaaagacttttcgaagcttgagttg
aagcctgaccatgttaatcgacctctttgggtttgcgtcgacggccggatattcctggag
acgttttcgcccctttataaacaggcgtacgatttccttatcgccattgctgaaccggtc
tgcagaccagaatctatgcatgaatacaatttgacacctcattcgctttatgctgccgtg
tctgttggacttgagacaagtacaatcatcaatgtgctggaaaaactgtccaaaacgagg
ctacctaaggacatcattgattttgtttatgcttcaacttcaaactacgggaaggtgaag
cttgtgctcaagaagaatcgctactttgtggagtctccatttcctgaggtattgaagaaa
ttgttgcatgacgaagtcatttctcgagcaaggaagttctcttctgaggatgacacattt
atggtcagcaaagcacttggtggaattgaaggtggtcatgaggagttgcttgatgcagtg
gacctggctgcagcaacagaggagaaagaaacacactcttttgaaattgatcctgctcag
gttgaaaatgttaagcaacggtgtttgccaaatgctttgaattatccaatgttggaagag
tatgatttcagaaatgacaatgtgaatccggacttgaatatggagctcaagcctcaagcc
caaccaaggccataccaagaaaaaagccttagcaagatgtttggaaatggaagagctaga
tctgggattatcgtacttccctgtggagcaggaaagtctcttgttggggtttctgcagct
tgtcggataagaaaaagttgtctctgtctggctaccaatgctgtctctgtcgatcagtgg
gcttttcaatttaagctttggtctactatccgagatgatcagatttgtcgttttacttct
gatagcaaggaaagatttcgtggtaatgctggtgtggttgtgactacatataatatggtt
gcttttggaggtaaaagatcagaggaatctgaaaagattattgaagaaattcgaaacaga
gaatggggcttgcttcttatggatgaggttcatgtggttccagcacatatgtttcggaag
gttattagtatcacaaagtctcattgcaaacttgggcttacagctacattgctgagagaa
gatgagcgtataacagatctgaatttcctgattggtccaaaattatatgaagcaaactgg
ctggatttagtaaaaggtggttttatcgcaaatgtgcaatgtgcagaagtgtggtgccca
atgacaaaggagttctttgcagagtatctgagaaaggaaaactcgaagaaaaagcaggca
ctatatgttatgaatcccaacaaatttagggcttgtgagtttttgatacggttccatgaa
caagagcgaggagacaagataattgtatttgctgacaatctctttgcacttactgagtat
gcaatgaagcttcggaaacctatgatctatggtgctaccagccacagtgaacgaacaaag
attctttctgcatttaaacacagtccagatgtcaacacaattttcctttctaaggttggt
gataattcaattgatattcctgaggccaacgtgataatccagatatcatcacatgctggt
tcacggaggcaagaagctcaacgtctgggtcgtattcttagggcaaaaggtcggcctcaa
gataggatggctggaggaaaagaagaatacaatgcattcttctattctcttgtctccact
gatacacaggagatgtattactcaacaaagaggcagcaatttctgattgatcaaggttac
agttttaaggttataacaagcttaccaccacctggttcagggtcagagcttggttttcat
cgccttgatgagcagcttgcgcttctaagcaaggtactgagtgcaggtgatgatgttgtt
ggtctggagcagctagaagaagacgctgatgacattactctccagacccgccgctcggct
ggatcattaagcgccatgtctggagcaaacaagatggtctacatggaatacaacactggc
aagggcaagttagtagcgcatggccaggccaaaagcaagcccaaggatcctgcaaagcgg
catgtactgttcaagaggcgctatggttaa
DBGET
integrated database retrieval system
