Nymphaea colorata (blue-petal water lily): 116262014
Help
Entry
116262014 CDS
T07418
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116262014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116262014
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116262014
Spliceosome [BR:
ncol03041
]
Complex C
Other components
Step II factors
116262014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
HA2_C
zf-C3HC4_2
zf-C3HC4
IBR_1
AAA_19
zf-RING_5
zf-RING_UBOX
HA2_N
ABC_tran
AAA_30
DAP3
Helicase_RecD
T2SSE
Motif
Other DBs
NCBI-GeneID:
116262014
NCBI-ProteinID:
XP_031496865
LinkDB
All DBs
Position
10:4848717..4858893
Genome browser
AA seq
1703 aa
AA seq
DB search
MRRMGPSHFTSAYGRRARPEFEVQLVASGWKGFRASEIDEVILACPPADVTRVCQSGVVA
ALLGYRQWDDAAQAVIAIWVGRLAGGHFLTPQLRAFGCSTANREKLALRLKSVFVSHIDG
LLEGDAVQRCRKKLEVVEKEVADVKTAMKGRNALARYRALQEKVEGLNVQKNQIAKRLEE
FQSAMLAVTSFLELSGEDSIESEAELFLLGDDQEPNWDRIHHVLLRECRRLQEGLPIYSC
RRQILNHIHYRQVMILTGETGCGKSTQLIQYLADSELTRDGSVICTQPRKIAALSLAQRV
GEECRGCYIGKSVICYPSYSSFQQLNTKIIYMTDNCLLQHFMLDTNLSRVSFIVIDEAHE
RSLNTDLLLALLKKLLLQRPDLRLIIMSATADARKLSEYFFGCDTFHVTGRTYPVDIKYV
PSLLEPSNANFSSLSSLSCPYVIDVVKTANKIHKTEKDGSILAFLTSQAEVEWACENFQN
PSAVALALHGKLSCDEQSRVFQDYPDKRKVIFATNVAETSLTIPGVKYVIDSGMVKESRF
DPRTGTNVLNVCKISQSSANQRSGRAGRTEPGKCYRLYSEQEFQSMQSHQDPEIRRVHLG
IAVLKIVALGITNVLDFEFVDSPSPEAVELAIRNLVHLGAVICKNNTLELTDCGHCLVKL
GIEPRLGKLILCSFDYGLRREGVILAAVMANASSIFCRIGSAEEKTRSDCLKLQFCHPNG
DLFTLLAVYKEWEDALKSRKNIWCWENSVNAKSMRRCKEAVVELEYCLRHELNIIIPSYW
LWKPHLPSKHDNMLKMVILSSLSENVAVFSGHDRLGYEVAMTGQLIQLHPSCSLLAYGQK
PNWVVYGELLSVSRQYLVCVTAIDQECLSAIEPPPLFDALELGNRIMQKKIVSGIGNNIL
RRLCGKSNSNLQCLISQIQKSCEDDRISVDVDFDRREVQVFASVKSLDKAFNMVNCSIEC
ETKWSKNECIEKYLFHGVHGTSPPFALFGSGAEVKHLELEKRFLTVEVSHPKVKCLNDKE
LLMLFDNCTSSIANFYKYPPASQEGDKYEKWGKVTFLSPEAAEMAVIKLNEVELDGFSLK
VFPFRPAFGVDPKVFSFPAVKAKITWPRRQSKGVAIIRCAPNDVTVVAEECSAMLIGGRY
VHCDVSTKFPDSAVIMGLSKDVLEAEIWEALRNRTTRKILDVHLLRGQVVHQPSGTACEE
ALLKEITDFVPGDKCHVHMFNSEPKDYLMKAWITFDGNLHLRAAMALDHLHGKVLSCCLP
WQRVHCEHIFQSLVSCPSSVYFVIKKDLESLFEKMKFQKDAVVSMERTGSGSFRVKIVAS
ALRTVAQCRLSFEKLMKGKTITHVDLTVSVLQVLFTQVGIQLLKSLERETGTYILFDRHN
LSLKAFGPQQGIAVAEKKLVESLLALHREKECEIHLRGAEMPHNLMKEIVRLFGPDLHGL
KQKVAGVDFKLNVRRHILSFSGSKEQKHQIENIIAGIVQDMSGRQVRMHNDEATCPICLS
EVEDGFKLEACGHEFCRLCLIDQIEAAIHSRDGFPLCCIDEGCKMPFFLVDLRSLLSSEQ
LDELFRASVGAFVASSGGKYRFCPTPDCPSVYKVADPESPVGLFICGACSAEICTKCHIE
SHPFMTCEQYKEFKEDPDRSLKEWKRGKEHVKNCLACGYTIEKVDGCNHVECKCGNHICW
VCLAGFPASDDCYAHMRSVHPAG
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggatgggtccctcacactttacttcggcctacggtcggagggcgaggccggag
ttcgaggttcaattggtggcgtcgggatggaaagggtttcgggcatcggaaatcgatgaa
gtgattctggcatgccctcctgccgacgtcacgcgagtttgccagtcaggcgtcgtagct
gcactgctcggataccggcaatgggacgacgcagcgcaggccgtcatagcgatctgggtg
ggcaggcttgccgggggccactttctcacccctcaacttcgtgcctttggttgctctacg
gccaaccgcgagaagcttgcgttgaggctgaagtcggtgttcgtctcgcacattgatggg
cttcttgagggcgacgcagtacagaggtgcaggaagaagctcgaggtggtggagaaggag
gtggcggacgttaagaccgcgatgaaggggagaaacgctttggcaaggtacagggcactg
caggagaaggtggaaggcctcaatgtacagaagaatcagatagcgaagcggctcgaggag
ttccagagtgcgatgctcgctgtgacgtcgtttctggagctctcgggtgaggattccatt
gagagtgaggccgaattattcttgctcggcgatgatcaggagcctaattgggacaggatt
caccacgttctgttgagggagtgccggaggcttcaagaagggctgcctatctattcctgc
aggcgccaaattctcaaccacatccattatcgacaggttatgattttgaccggggaaact
ggctgtggcaagagtactcagttaattcaatatcttgcagattcagagttaacaagggat
ggatcagttatatgcacccagcctcgcaagattgctgctctatctttggcacaaagggtg
ggagaagaatgccgtgggtgttatattgggaagtctgtgatttgctatccttcttactct
tcttttcaacagttaaatacaaagataatctatatgacagataattgtctcctccagcat
ttcatgcttgacacaaacttgtccagggtttcatttattgttatagatgaagctcatgaa
agaagcttgaataccgatcttcttttggctttgctgaaaaaattgctgctccaaagacct
gatcttcggctcattataatgtctgcaacagctgatgcaaggaagctctcggagtacttt
ttcggctgtgacacatttcatgtgacgggaagaacttatcctgttgatattaagtatgtt
ccaagcttgttggaaccttcaaacgctaatttttcaagtctcagttctctaagctgccca
tatgttattgacgttgttaagacagccaataaaattcacaagacagagaaggatgggtct
attcttgcctttttgacttcacaggcagaagttgagtgggcttgcgaaaattttcagaac
ccttctgctgttgcactggcattgcatgggaaactgtcctgtgatgagcaaagtcgtgtt
tttcaggattatccagacaagaggaaagtcatctttgcaaccaatgtggcagaaacttct
ctgaccattccaggggtgaagtatgtgattgattctggtatggtcaaagagagcaggttt
gatccgagaactggcacaaatgtactaaatgtatgtaagatcagccaaagttctgccaat
caacgatccggccgtgctgggcgcacagaaccgggtaaatgttacaggctttattcagag
caagagttccagtctatgcaatcacaccaagatccagagatcagaagggttcatcttggc
attgctgttctgaagattgttgctcttggcattactaatgtgctagactttgaatttgta
gattctcccagtccagaagcagtagaactggctataagaaatttggttcatttgggtgct
gtgatctgcaagaataacacattggagttgacagattgtggccattgccttgtaaaactg
ggtattgagccccgacttggtaaacttattctttgtagctttgactatggtctacgccgg
gaaggtgttattcttgctgctgtaatggcaaatgcaagtagcatattttgcagaattggc
agtgccgaggagaaaacaaggtctgattgcctcaagcttcagttctgccatcctaatggt
gatctattcactctccttgctgtttataaggaatgggaagacgcactcaagtctaggaag
aatatatggtgctgggagaacagtgtcaatgctaagtccatgcggagatgcaaagaagct
gtagttgaattagaatactgcctcaggcatgagcttaatataatcattccctcatattgg
ttatggaaaccacatctgcctagcaagcatgataatatgctaaagatggttatactttcg
tctctttcagagaatgttgctgtgtttagtggacatgaccgtcttggttatgaagtagca
atgacaggccaactaatacagctccatccctcatgttcccttctagcatatggccagaag
cctaactgggtcgtttatggtgagcttctgtctgtttcaaggcaatatttggtttgtgta
actgccattgaccaagaatgtcttagtgccattgaacctcctcccttgtttgatgctttg
gaactgggtaatcggataatgcagaagaaaattgtttctggaattggaaataatattttg
agaagattgtgtggaaaatcaaattctaatttgcaatgtcttatttcacaaattcaaaag
tcatgtgaagatgaccgaatttctgttgatgttgattttgacaggagagaggtccaagta
tttgcttctgtgaaatccttggataaggcttttaacatggtaaactgttcaattgagtgt
gaaacaaaatggagtaaaaatgaatgcattgagaaatatttgtttcatggagtgcatggt
acctctcctccttttgcattgtttggttcaggtgctgaagtaaagcatttggaactggag
aaaaggtttctaacagtcgaagtttctcatcctaaggtcaagtgtcttaatgataaagaa
ctgcttatgttgtttgacaattgtacgtctagtatagctaatttttacaagtatcctcct
gcttcacaagaaggtgataaatatgaaaaatgggggaaagtaacgtttctttctccggaa
gctgcggaaatggcggtcatcaaattgaatgaagtagaactggatggtttttctctaaag
gtgtttcctttcaggcctgcctttggtgttgatcctaaagtattttcctttcctgcagtc
aaggcaaagattacatggcctcgcaggcaaagcaagggtgttgccatcattagatgtgca
cctaatgatgtcactgttgtcgcagaagaatgttcggcaatgctgattggtggaagatat
gtacattgtgatgttagcacaaaatttccagattctgctgtcataatgggacttagtaaa
gatgttcttgaagctgaaatttgggaggcattgagaaatagaacaacaaggaaaatacta
gatgttcacttattgcgaggacaagtagtccatcagccttctggtaccgcttgtgaggaa
gctcttcttaaagaaatcactgattttgtacctggggataagtgccatgtccatatgttt
aattctgaaccaaaagattatttgatgaaggcttggattacttttgatggaaatcttcat
ctcagagcagcaatggctttggatcaccttcatgggaaagtactctcttgttgcctccct
tggcaaagagtacattgtgaacacatattccaaagcttagtctcatgtccttcctctgta
tattttgtcatcaagaaggacctggagtctttgtttgagaagatgaaatttcaaaaagat
gccgttgtcagtatggagagaactggaagtggttccttcagagtgaaaatagttgcttct
gcattgcgtactgttgcacaatgtcggttgtctttcgagaagctaatgaaaggaaaaacc
atcactcatgtggatctcacggttagtgtgctccaagtactatttacgcaagtgggtatc
caactgttgaagtcattggagagagagacagggacatatatcttatttgacaggcataac
ctcagcttaaaagcttttggacctcaacagggaattgctgtagctgagaaaaaattggtg
gaatctttattagctcttcacagagaaaaggaatgtgaaatccacctccgtggtgctgag
atgccacataatctgatgaaagagatagtccgcctttttggacctgatttgcatggtctc
aagcagaaggtggctggggtagacttcaagctcaatgttcgtcggcacatactctcattt
tctgggagcaaggaacaaaaacatcaaatcgaaaatataattgctggtattgtacaggat
atgagtggtcggcaagtcagaatgcacaatgacgaagccacatgcccaatttgtttgagt
gaagttgaagatggtttcaagcttgaggcatgtgggcatgagttctgtaggctttgtttg
atagaccaaatcgaagctgcaatacacagtcgggatgggtttccactatgctgcattgac
gagggatgtaaaatgccattttttttggtagatttgaggtcccttctttctagtgagcag
ttagacgagctattcagagcatctgtaggggcttttgtggcttctagtgggggtaaatac
aggttttgtccaacccctgattgcccgtccgtgtacaaagttgctgaccctgagtcgcct
gttgggttgttcatttgtggagcatgttcagcagagatatgcaccaagtgccacatagaa
tctcatcctttcatgacgtgtgagcaatacaaggagttcaaggaggacccagatagatca
ctgaaagagtggaagagaggaaaagaacatgtaaagaactgcctagcctgtggatacaca
atagagaaggtggacggatgtaatcatgtggagtgtaaatgtgggaatcacatctgttgg
gtttgtttggcaggattccctgccagtgatgattgctacgcacacatgagatctgtgcat
cctgcaggatga
DBGET
integrated database retrieval system
