Nymphaea colorata (blue-petal water lily): 116262284
Help
Entry
116262284 CDS
T07418
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116262284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncol03041
]
116262284
03009 Ribosome biogenesis [BR:
ncol03009
]
116262284
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116262284
Spliceosome [BR:
ncol03041
]
Complex A
U2 snRNP components
U2 related factors
116262284
Complex B
116262284
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116262284
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
90S particles
Helicases
116262284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
Flavi_DEAD
SRP54
PhoH
T2SSE
AAA_30
TsaE
AAA_7
Motif
Other DBs
NCBI-GeneID:
116262284
NCBI-ProteinID:
XP_031497367
LinkDB
All DBs
Position
10:23008646..23014180
Genome browser
AA seq
720 aa
AA seq
DB search
MATERKRKVSLFDVVDDSVSGKISKVNGSAPRPSSSVNRWTGRPFSARYYEILDKRKTLP
VWQQKQEFLDALEKNQTLVLVGETGSGKTTQIPQFVVEAGYTSNRKQIACTQPRRVAAMS
VSRRVAEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMTDPLLERYRIIILD
EAHERTLATDVLFGLLKEVLKNRADLKLVVMSATLEAEKFQGYFNGAPLMKVPGRLHPVE
IFYTQEPERDYLDAAIRTCVQIHMCESIGDILVFLTGEEEIEDACRRLNKEINNLGDQVG
PVKVVPLYSTLPPAMQQKIFEPAPPALKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTERSFQDDLQPQTYP
EILRSNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGNLTKLGE
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPRDAQKAADEAKARFGHT
DGDHLTLLNVYHAYKQNDEDSTWCYENFINHRAMKAADNVRQQLVRIMARYSLKLCSTDF
NSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSICLDHKPEWVIYNEYV
LTSRNFIRTVTDIRGEWLIDIAPHYYDLANFPKCEAKRVLEKLYVKREKEKAEAKNRNKV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagaggaagcgcaaggtgagccttttcgatgtcgtggacgatagcgtctcg
gggaagatctcgaaggttaacggatcggcgccccgcccctcgtcgtcggtgaacaggtgg
acggggcggccgttctcggcgcgttactacgagatcctcgataagagaaagacgcttccg
gtatggcagcagaagcaggagtttctcgacgcgctggagaagaaccagacgctcgtcctg
gtgggggagaccggtagtggaaagacgacgcagatcccccagttcgtcgttgaagctggt
tacacgagcaaccgtaagcagattgcttgtactcaacctcgtagagtggctgcaatgtct
gtgtcacgccgagttgcagaggagatggatgttacaataggcgaagaagttggttatagc
atccgatttgaggattgtagtggtcctaagactattctaaagtacttgactgatggtatg
cttttgagagaagcaatgacggacccacttctggagcgttatcgaataataattttagac
gaggcacatgagaggaccttggcaacagatgtgctatttggccttcttaaggaagtcctg
aaaaacagagctgacttgaagcttgttgttatgagtgcaacacttgaagcagaaaaattt
cagggatattttaatggagcaccactcatgaaagtacctggaagattgcatcctgtggag
attttctatacccaggagcctgagagagattatctggatgcagcaattaggacttgtgtg
cagatacacatgtgtgaatctattggggacattcttgtgttcttgacaggagaggaagaa
attgaagacgcttgcaggagactcaacaaggagatcaacaacctgggtgaccaggttggg
ccagtgaaagttgttcccctgtattctacgttacctcctgcaatgcagcagaagatcttt
gagcctgccccaccagcactgaaagaaggaggtcctcctggaaggaagattgttgtgtca
actaacattgctgaaacgtctctaacaattgatgggattgtgtatgtcattgatcctggg
tttgcaaaacagaaagtttacaacccacgggtacgtgtagaatctctcttggtttctccc
atatcaaaggctagtgcacaccaaagggcaggccgtgctggaagaacacagcctgggaaa
tgctttagactttacacagaaaggagttttcaggatgatcttcagccacagacgtatcca
gagatccttcgctctaacctggctaatgttgtacttactttgaagaaactgggcattgat
gatttggttcactttgattttatggacccccctgcccctgaaactttgatgcgagcttta
gagcttttgaattacttgggtgcactagatgatgaggggaacctgacgaagttgggtgag
attatgagtgaatttcctctggatcctcagatgtcaaagatgcttgttgttagtcctgag
ttcaattgttcaaacgaaatcctctcaatttctgccatgctttcagtcccaaattgcttt
atccggcctagggatgctcagaaggcagcagatgaagcgaaagctcggtttggccacacg
gatggagatcaccttaccctactgaatgtctaccatgcttacaagcaaaacgatgaagat
tcaacatggtgttatgagaatttcatcaatcatagagcaatgaaggcagctgataatgta
agacaacagctggtgcgtatcatggccagatacagcctcaagttatgcagcacagatttt
aacagccgggactactatgtcaacatacggaaggcaatgctggctgggtactttatgcag
gttgctcaccttgaacgaactggtcattatttgactgtgaaggataatcaggtggttcat
ttgcatccttcaatttgccttgaccacaagccggaatgggttatatacaatgagtatgtt
ttgaccagtagaaatttcattcgtacggtcactgacattcgtggtgaatggttgatcgac
attgcacctcattactatgaccttgccaacttccccaaatgtgaagcgaagcgcgttctg
gaaaagttgtacgttaagcgggagaaggagaaagcagaagccaaaaatcggaacaaggtt
tag
DBGET
integrated database retrieval system
