Nymphaea colorata (blue-petal water lily): 116262821
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Entry
116262821 CDS
T07418
Name
(RefSeq) protein CHROMATIN REMODELING 25 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116262821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116262821
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
116262821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
116262821
NCBI-ProteinID:
XP_031498188
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Position
10:complement(10067102..10082697)
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AA seq
957 aa
AA seq
DB search
MAVREDDDGQSPAHSDGSGCFYDDDDEEEFRQSGSEEEEDEGDGRDEEFRPDDDDDNEDG
GRAASGAFSSSSDADRKKQNVDALLRGNLVVRRQALLPRVLSVAEGAAVARRPFKPPCRN
GYSDQNGELGRRLCIRKRFVPWGSPRPALLAITNCLNVPIFPKKEVVEETPPLPPGVEPL
VLWQPDDLDVHGENSPSIVVDPLLVHFLRPHQREGVQFMFECVAGLSKEPDINGCILADD
MGLGKTLQSITLLYTLLRQGFDGKPLAKRVMIITPTSLVSNWESEIKKWLDKRVQVIALC
EATRADVVVGIDNYLAPCSHYEILIVSYETFRMHSSRFEKPGSCDLLICDEAHRLKNDQT
LTNKALASLSCTRRVLLSGTPMQNDLEEFFAMVNFTNPGILGDASYFRRYYEAPIVAGRE
PGATAEERQLGLERSAELSMKVNQFILRRTNALLSEHLPPKIVEVVCCKLTPLQVALYNH
FIQSKNVKRAIVEDVKQSKILAYITALKKLCNHPKLIFDAIRSGGSGSGFEDCLHLFPPE
LFSGRSGSWTGGGGIWVELSGKMHVLARLLAHLRQRTDDRVVLVSNYTQTLDLFAQLCRE
RRYPFLRLDGSTSISKRQKLVNRFNDISKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW
NPANDKQAAARVWRDGQKKRVYIYRFLTAGTIEEKVYQRQMSKEGLQKVIQQEQLENLGL
QANLISTEDLRDLFTLHANIRSEIHENMNCARCNTNNMQVEDGIKSLTQYVFERRVAEDV
CHTDQPDADIGGFAKIAGCLEELKNSEKQLGRPLEEDLASWGHHSSSTTVPDVILQASAG
EEVTFVFTNQVDGKLVPVEPMERKSPVSDTILMKPLNPSSALSSHKVSASSHLIEDSTIW
RTSGAFPPLQKLPKFPMTAKHTNTSVNSVSKESISHKIQLPVKRISAEIDDDDDDFV
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcgagaagatgacgatggccaatctccggcccattccgacggcagcggctgc
ttctacgacgacgatgatgaggaagagttccggcaaagtggaagcgaggaagaggaagac
gaaggtgatggccgagacgaagaattccggccggacgacgacgacgacaacgaggatggc
ggtcgagcagcgtctggtgccttttcgtcgtcatctgatgccgaccggaagaagcaaaat
gtcgacgctctcttaagaggtaacctggttgtgagaaggcaagctttgctgcctagggtt
ttatcagtagccgaaggggctgcagtagcaagaagaccgttcaagcctccttgcagaaat
gggtatagtgatcagaatggggagcttggtcgcaggctatgtattcggaagaggttcgtg
ccatggggctctccaaggccagctctacttgcaataaccaactgcttgaacgttccgatt
ttcccaaagaaggaggttgtggaggaaactccgcctctgccacctggcgtcgagcctttg
gtgctttggcagccagatgatttggacgtgcatggggagaattccccatcgattgtggtt
gatccactacttgttcattttttaaggcctcatcaaagagaaggtgttcagtttatgttt
gagtgtgttgctggcttgtcaaaagaacctgatatcaatggctgcattttagcagatgat
atgggattagggaagacattgcagtcaatcacgttgctgtatacccttcttcgccagggg
tttgatgggaagccattggcgaagagggtaatgattatcactccgacaagccttgtcagt
aactgggaatctgaaataaagaagtggctcgacaaaagagtccaagtcattgctttgtgt
gaagccacgagggcagatgttgttgtaggcattgacaattatttggcaccttgtagccat
tatgagatattgatagtctcatatgagacatttcgaatgcactcatcaagatttgagaaa
cctggatcttgtgaccttttaatctgtgatgaggctcataggttgaaaaatgatcaaact
ttgacaaacaaggcattagcttccctttcatgcacaaggcgtgtccttttatcagggaca
ccaatgcagaatgaccttgaagaattctttgcaatggttaacttcactaatcctgggatc
ttgggagatgcatcatattttcgtcgatattatgaggcaccaattgttgctggaagggag
cctggtgcaacagcagaagagagacaattggggctagagagatctgctgaacttagtatg
aaagtaaaccaatttatactcagaagaacaaatgccttgttatcagagcacctaccacca
aagatagtagaggtggtttgttgcaaactgactcctcttcaagttgctctctacaaccat
tttatacagtcaaaaaatgttaaaagagccattgttgaagatgtgaaacaatccaaaatc
ttggcatacattacagctcttaaaaagctgtgcaatcatccgaagctcatttttgatgct
attcggagtgggggttcaggttctgggtttgaggactgtttgcatcttttcccacctgag
ttattctctgggagatctggatcatggactggtggaggtggtatctgggtagaattgtct
ggaaaaatgcatgtcttggcaaggttgctggcacatcttcgacagagaacagatgaccga
gttgttcttgtttcaaactacacccaaacgttggatcttttcgctcagttgtgtcgtgaa
agaagatatcctttcctaaggcttgatgggtccacttcaataagcaaaaggcaaaagctc
gtcaaccgatttaatgacatatcaaaggatgagtttgtgtttctcttaagcagcaaggct
ggtggatgtggacttaatttgataggtggaaatcgtttggttctttttgatccagattgg
aatcctgccaatgacaaacaggcagctgcaagggtttggagagatggacagaagaagcga
gtgtacatatacaggttcctaacagcaggaactattgaggaaaaggtctatcaacgtcaa
atgtcgaaagaaggccttcagaaagtaattcaacaagagcaattggaaaaccttggactg
caggcaaatcttatttctacagaagacttgagggatcttttcaccttgcatgctaacata
aggtcggaaattcatgaaaatatgaactgcgcacgctgcaataccaacaatatgcaagtc
gaagatggcataaaaagtctgacacagtatgtatttgaaagaagggtggcagaagatgta
tgtcacactgatcagccggatgctgatattggtggatttgcaaagattgctggatgcctt
gaagagttgaaaaattcagagaagcaactgggaagaccacttgaggaggacttagcaagc
tgggggcatcattcctcttcaactactgttcctgacgtgattcttcaagcttcagctggt
gaagaggtcacatttgtctttaccaatcaagttgatggaaagctggttccagttgagcca
atggaaagaaagtcacccgtttcagataccatcctgatgaaaccccttaaccctagttct
gcactttcatcacataaagttagtgcctcatcccatttgattgaagattcgaccatctgg
agaacaagcggtgcctttcctcctttgcagaagctgccaaaatttcctatgacagcaaag
cacactaatactagtgtaaattctgtaagcaaagaaagcatctcgcataaaatccagcta
cctgtcaaaaggatatctgctgaaattgatgatgacgatgatgattttgtttag
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