Nymphaea colorata (blue-petal water lily): 116263140
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Entry
116263140 CDS
T07418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116263140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116263140
03012 Translation factors [BR:
ncol03012
]
116263140
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116263140
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116263140
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116263140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
Motif
Other DBs
NCBI-GeneID:
116263140
NCBI-ProteinID:
XP_031498612
LinkDB
All DBs
Position
1:43769460..43869619
Genome browser
AA seq
1023 aa
AA seq
DB search
MTVCRRPFPALISITVGKSSVRRVAAMSANPRSFRGGRRSSEGGRRGGGSGGRGGRGSGE
QRWWDPVWRAERLKQMNGEVENLNENEWWTKMEQLKLGGEKEIIAKRNYGREGQRTLEQM
AQKLGLYFHAYNKGRTFVVSKLPLPNYRVDLDDRHGSTRKEINMSTETARRVDCLLGSSS
KAPQNDESQNVSTQRSMQSSTFAATKSSSTAARDIARETANNDLREKLQLLKAAPAYRAM
QSFREKLPAYNVRTEFLKVVAANQVLVVSGETGCGKTTQLPQFILEAEIDSFRGMSCNII
CTQPRRISAISVAARISTERGEDLGETVGYQIRLEAKRSAQTQLLFCTTGVLLRRLVQEP
ELSGVSHLLVDEIHERGINEDFLLIILRDLLPRRPDLRLILMSATINAEHFSKYFGNSPT
IHIPGFTFPVKEVFLEDLLEKTRYCINESESDNFQGAGRRRKQMEGKRDPVTDLFEEVDI
SSHYRNYSASTRRSLEAWSGSQLDLGLVESTIEYICRSEGAGAILVFLTGWDEISKLLEK
IKENRFLGNPSRFLILPLHGSMPTINQREIFDRPPSGTRKIVLATNIAESSITIDDVVYV
IDCGKAKETSYDALNKLACLLPSWVSKASAHQRRGRAGRVQPGICFRLYPKLIYEAMSEY
QLPEILRTPLQELCLTIKSLQLGCISSFLAKALQPPDPLSLQNAIDLLKTIGAFDDMEEL
TPLGRHLCTLPLDPNIGKMLLFGSIFQCLDPALTIAAALAHRDPFVLPINRKEEADEAKR
FFAGDSFSDHIALLKAFESWQHAKRDGKARDFCWRNFLSPTTMQMIEDMRNQFYDLLSDI
GFVDKARGMKAYNLYSMDIEMICATLCAGLYPNVLQCKRRGKRTAFYTKDVGKVDIHPSS
VNAGIHLFPLPYMVFSDKVKTTSVFVRGSTNISDYTLLMFGGNLMPSRSGEGIEMLGGYL
HFSASKSVLQLIQRLRGELDRLLQKKIEDPEVDITAEGKGVVAAVVELLHSQNLQETYGY
RRH
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtctgccgaaggccgttccctgctctaatatccatcaccgtcggaaagagtagc
gtccggcgagtggcagccatgtcagcaaaccctagatccttcaggggcggcagaagaagc
agcgagggcggaagaaggggcggtggtagcggtggtcgagggggacgcggcagcggcgag
cagagatggtgggatcctgtttggagagcggagagactgaaacaaatgaacggggaggtc
gaaaatctgaatgagaacgagtggtggactaagatggagcaactgaaactgggaggagag
aaggaaataatcgcaaaacgaaactatgggcgtgaaggacagcgtacacttgaacagatg
gctcaaaagcttggtctttacttccatgcatataataagggaagaacatttgtcgtaagc
aagttgcctttgccaaactatcgagtagacttggacgaccggcatggatctacaaggaaa
gagattaacatgtctacagagactgcaagaagagttgattgtcttttgggtagctcttca
aaagcacctcagaatgatgagtctcagaatgtttctactcaaagaagcatgcagtcttcc
acttttgctgcaacgaaatccagtagcacagctgcaagggacattgcaagggagacggct
aataatgatctacgagaaaagctacaactcctgaaggcagcccctgcttatagagctatg
cagtcttttcgggagaagttgcctgcttacaatgtgaggactgaatttctaaaagtagtc
gcagcaaaccaggtcctagtagtttctggtgagactggctgtggcaaaactacacagttg
ccacagtttatcctagaagcagaaattgactctttccgtgggatgagctgtaatataata
tgtacacagccacgccgtatatctgctatatctgttgctgcacgtatttcaactgaaaga
ggtgaagacctcggtgaaactgtgggctaccagatccgcttggaagcaaagcgttctgct
caaacacagcttctattttgtacaactggcgtccttcttcgtcgcctagttcaggaacca
gaattatctggtgtcagccatttgttagtggatgaaatacatgaaagaggaattaatgag
gacttcctgttaatcatcttacgtgatcttcttcctcggcgtccagatttacggcttatt
ttaatgagtgccacaatcaatgctgaacatttctccaaatattttggaaattctcctaca
attcacataccgggcttcacttttccagtaaaggaagtgtttctagaagacttgctggaa
aaaactcgttactgcatcaacgagtcagaatctgacaactttcaaggagctggtaggaga
aggaaacagatggaagggaagagagatccagtgactgatttatttgaggaagttgatatt
agttctcattatagaaactatagtgcaagtacgcgacgctccctggaagcatggtctggt
agtcaacttgatttaggtcttgtcgagtcaacaatagagtacatatgtcgatctgaaggg
gctggagcaattcttgtgtttcttactggctgggatgagatatccaagctacttgagaaa
attaaagaaaacagatttttgggaaatcctagcagatttttaattcttcctttacatggt
tctatgcctaccataaatcagcgtgaaatatttgatagaccaccaagtggcacaagaaaa
attgtgcttgcaacaaatattgcagaaagcagtatcacaattgatgatgtagtgtatgta
atagactgtggaaaagcaaaagaaacaagctatgatgctcttaacaagctagcatgtttg
ctaccatcatgggtatcaaaagcatcagctcatcagaggcgtggtcgtgcagggcgtgtt
caacctggtatttgctttcggttgtacccaaaattgatctatgaagcaatgtcagaatat
cagcttccagagattcttcggaccccactccaagaactctgcttgaccattaaaagctta
cagcttggatgcattagctcgttcttagccaaagcccttcagccacctgatcctttgtct
ctgcaaaatgcgattgaccttctgaaaactataggggcttttgatgatatggaagaactc
accccactggggcgtcatctttgcactttgcctttggatccaaatattgggaaaatgctg
ctgtttgggtccatctttcaatgtttggatccggcactaaccattgctgcagctttagca
catcgtgatccatttgtccttccaataaatagaaaagaagaagctgatgaagcaaaacga
ttctttgctggtgactctttcagtgatcacattgcacttctcaaagcatttgaaagttgg
caacatgctaaacgtgatggcaaagcacgtgatttttgttggagaaactttttatctcct
acaacaatgcagatgatagaggacatgaggaaccagttctatgatctactctctgatatt
ggatttgttgataaagcacgaggaatgaaggcatacaatctttatagcatggatatagag
atgatatgtgccaccctctgtgctgggttatatcctaatgtgctgcaatgcaaacgaaga
ggaaaaaggacagcattctacactaaagatgttggtaaagtggatatccatccatcatcc
gtcaatgctgggattcatcttttcccgctgccatatatggttttcagtgacaaggtgaag
actactagcgtattcgtgaggggttcaactaatatatcagattatactctgctgatgttt
ggaggcaatctcatgcctagccgaagtggagaaggcatcgagatgcttggaggctacctt
catttttctgcttccaagagcgtattacaactgatacagaggttgagaggtgaacttgat
aggcttcttcagaagaaaatcgaggatcctgaggtagacattactgcagaaggaaagggg
gttgtagctgctgttgtggaattgttacatagccaaaatttacaagaaacgtatggttat
agacgccactga
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integrated database retrieval system
