Nymphaea colorata (blue-petal water lily): 116263244
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Entry
116263244 CDS
T07418
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030
DNA replication
ncol03420
Nucleotide excision repair
ncol03430
Mismatch repair
ncol03440
Homologous recombination
ncol03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116263244
03420 Nucleotide excision repair
116263244
03430 Mismatch repair
116263244
03440 Homologous recombination
116263244
03460 Fanconi anemia pathway
116263244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncol03000
]
116263244
03032 DNA replication proteins [BR:
ncol03032
]
116263244
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116263244
Transcription factors [BR:
ncol03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116263244
DNA replication proteins [BR:
ncol03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116263244
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116263244
MMR (mismatch excision repair)
116263244
DSBR (double strand breaks repair)
HR (homologous recombination)
116263244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
DUF5651
Motif
Other DBs
NCBI-GeneID:
116263244
NCBI-ProteinID:
XP_031498766
LinkDB
All DBs
Position
10:complement(997339..1000664)
Genome browser
AA seq
632 aa
AA seq
DB search
MAERLTPNAIGAVMAGDVDLKPLVQALDIVRMMAFGGNQERYRVTISDGVRSHHAVLASQ
LNDLAKGGHLRRGSVLQLIDYTCSSVQGRRFIMVLNMEIISVSCEVIGHPKPFADSKAST
SAEAGTGINNKQTSDVACMPSLENSADAVKLKSPTSNLCSKPGVQPSYRPPPAYTNRGPI
MKNEAPARIIPVAALNPYQGRWAIKARVTAKGDIRRYNNARGDGKVFSFDLLDADGGEIR
ATCFNSIVDRFYELIEVGRVYALSKGSIKPAQRNFNHLNNDWEIFLDSTSKVDRCPDEDV
SIPQQNFSFRPINEIENMENASVVDVIGVLVSVGQCVTILRKNGMETLRRILTLKDMSGR
SVELTLWGNFCNKEGREMQDLYDSGLHPVLAVKAGRVNDFSGKTIGTISTTQLFIDPDIP
ESQKLKDWFEREGKNGASQSISRDVMPLYQNEIRKNVSQIKDEGLGRMGKPDWVTIKAAL
SYIKVDTFCYTACPLMAGDRQCNRKVTKTTVGGWHCERCNQDFLECDYRYILQAQVQDHT
GVTWVTAFQESGEQILGCSAKELYLLKYEKEDDTRFGEIIKNALFRQYLFKLKIKEEIYG
DEQQTKATVVKSEKLNFSAETKHLLSLLQKNE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggctgacccctaacgctataggggccgtgatggccggtgacgtcgacctg
aaaccgctggtgcaggcactggacattgtcaggatgatggctttcggcggtaatcaggag
cggtacagggttacaatctctgacggcgtccgctcccaccacgctgtcctcgcctcccag
ctcaacgacctcgccaagggcggccatctccgtagaggctccgtccttcaactcatcgac
tacacctgcagctccgtccagggtcgcaggtttatcatggttttgaacatggagatcatt
tctgtcagttgtgaggtcattggtcatcctaaaccattcgcagactctaaagccagcaca
agtgctgaagctgggacaggaatcaataataagcagacatctgatgtggcttgtatgcct
tctttggaaaattcagccgatgcagttaaactaaaaagtccaacgagtaatctttgctca
aaacccggtgttcaaccttcttatagacctccaccagcttacactaatcgaggtccaatt
atgaagaatgaagcgcctgcaaggataattcctgtggctgccttgaatccttaccagggc
aggtgggcaatcaaggctagagtaactgccaaaggcgatatccgccgctacaacaatgcc
aggggagacgggaaggtattctcctttgatcttcttgatgctgatggtggtgaaatacgg
gcaacttgtttcaattcaattgtagatcggttttacgaacttatagaggtcggcagagtg
tatgcgttatcaaagggaagcatcaaaccggcacagagaaattttaaccatcttaacaat
gactgggagattttcttggattcaacctccaaggtggatcgttgtccagatgaggatgtg
tctataccccagcaaaacttttcatttaggcccatcaacgaaattgagaacatggagaac
gcttcagtggttgatgtcattggagttttggtgtctgttggtcagtgtgttactatattg
agaaagaatggcatggagactctaagaagaattctcactctcaaggatatgtcaggtcga
agcgttgagttaactctctggggaaacttttgcaacaaggaaggtcgagaaatgcaggat
ttatatgactctggtctccatcctgttttggctgtcaaagctggtagagtgaacgacttc
agtgggaaaacaatcgggacaatttccaccactcaactattcatagatcctgatatccca
gagtcgcagaagctaaaagattggtttgaaagggaaggcaaaaatggtgcatcgcagtct
atctctagagatgttatgcctctttatcaaaatgaaattcggaaaaatgtatcacaaatt
aaagatgaaggacttggaagaatgggtaagccagattgggtgacgattaaagcagccctc
tcttacataaaggtggatacgttctgctacactgcttgtcctttaatggcgggagatagg
caatgcaacagaaaggttacaaagactaccgttggtgggtggcattgtgaaaggtgcaat
caagatttcttagaatgcgattacaggtacattcttcaggcccaagttcaagatcacact
ggcgtgacatgggttacggccttccaggagtcaggggagcagatactaggatgttctgca
aaggaactgtacttgttgaaatatgagaaagaggatgacactaggtttggagagattata
aagaatgctctatttagacaatatctattcaagctcaaaattaaagaagagatttatggt
gatgagcagcagacaaaagccactgttgttaaatcagaaaaattaaacttttctgctgag
actaagcatctcctgtctttacttcagaaaaatgaataa
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