Nymphaea colorata (blue-petal water lily): 116263700
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Entry
116263700 CDS
T07418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116263700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116263700
03012 Translation factors [BR:
ncol03012
]
116263700
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116263700
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116263700
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116263700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
AAA_16
T2SSE
ATPase
nSTAND3
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
116263700
NCBI-ProteinID:
XP_031499297
LinkDB
All DBs
Position
1:complement(19918347..19928381)
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AA seq
1125 aa
AA seq
DB search
MPLSCVLLRSRFRVFCSGWLFGPSLASRSRSYCGYAIEQFSDDEYEVDFEDHKASPSVAN
IDEWRWKLSMLLRNQDEQEIVSKDKRDRHDYEQISNLAKRMGLYSEQYGKVIVASKVPLP
NYRPDLDEKRPQREVVIPLSLQRRVEGLLQEHVDRMQFPLGIRGGNANENETLTKEIEDD
VLTEENEDPMSDASIREKILQRRSVRMRNLQRSWQESPEGLKMMAFRKSLPAYREKERLL
SAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVAERVA
AERGEQLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLVDHNLDGVTHVFVDEIHERG
MNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNFFYGAPMTHIPGFTYPVSAYYLED
ILEKTGYKLTSFNQVDDYGQDKLWKTQRQLLTRKKKNQLSSLAEDALSKANFENYSSRTR
DSLASWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDISSLRDQLKAHPLLGDPNR
VLLLSCHGSMATSEQKIIFERPPPNVRKIVLATNMAEASITINDIVFVVDCGKAKETSYD
ALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCMYDAFAEYQLPELLRTPLNS
LCLQIKSLQVGSIAEFLSAALQPPEPLAVRNAIDFLKLIGALDEKENLTNLGRYLSMLPV
DPKLGKMLIMGAVFRCLDPVLTIVAGLSMRDPFLLPQDKKELAGTAKSRFSAKDYSDHMA
LVRAYEGWKDADREGSAYEYCWRNFLSAQTFQAIHSLRKQFNFILKDAGLLDGDANICNS
LSHNQSLVRAVICSGLFPGIVSVVHREKSMSFKTMDDGQVLLYVNSVNSRYQTIPYPWLV
FSEKVKVNAVFIRDSTGISDSILILFGGIITRGSMAGHLKMLEGYIDLFMEPSMAELYWN
LKEELDKLMQRKLEDPTLDIHKVGKYLMLAVQELVSADQCEGRFVFGRESKKRPSDANSS
IKHHTNPKSLLQTLLMRAGHTPPRYKTKHLRTNEFRALVEFKGMQFVGKPKRNKQLAERD
AAIEALGWLTQTSDKKDEEDDSPPDLTENMFKLLTKPRKSKHRRS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccgctctcttgcgtgctccttcggtccagatttagggttttctgcagcggatggttg
tttggaccgagcctggcctcgaggagcaggagttactgcggctatgccattgagcagttt
tcggatgacgagtacgaggtggattttgaggatcataaggcatctccttctgtggccaac
atagatgaatggagatggaaactgagcatgcttttgagaaaccaagatgagcaggagatt
gtgtcgaaggataaaagagataggcatgattatgagcaaatctccaatcttgcaaaaagg
atgggtctctacagtgaacagtatggaaaggtgatagttgcaagtaaggttcctttgcca
aattataggcctgatctggatgagaagagaccacagagagaggttgtgattccacttagc
ttgcaaaggagagtggagggtttgcttcaggaacatgttgacaggatgcagttcccttta
ggtatccgtggtggtaatgcaaatgaaaatgaaactttaactaaagagattgaagatgat
gtgttgactgaagagaatgaagaccctatgtcagatgcatcaattagggaaaagatactc
cagagaagaagtgtgagaatgcgcaatcttcagagatcatggcaggaatcaccagagggc
ctgaaaatgatggctttcaggaaatcacttccagcttacagggagaaggagcgtttgctc
tctgccattgcacgtaatcaggtcattgtggtctctggggagactgggtgtggaaaaaca
actcaacttccccagtacattcttgaatctgaaattgagtcaggtcgtggagcattctgt
aatattatttgtacacagccacgaagaatatcagccatggcagttgcagagagagttgct
gcagaaagaggggagcaactgggagaatctgttggttacaaagttcgactggaggggatg
aagggaaaaaacacacacctgctcttttgtacgagtggtattctgctgagacgcttgctg
gtagatcataatctggatggtgtaacacatgttttcgttgatgaaatacatgagcgagga
atgaacgaagatttcttgcttattgtgttgaaggatcttcttccacgccggagggacttg
agattggtcttaatgagtgcaactctgaatgcagagttattctcaaatttcttttatgga
gcaccaatgactcatattccaggtttcacatatcccgtaagtgcatattatctggaagat
atactagagaaaactggatacaaactgacttcatttaaccaagttgatgattatggccaa
gataaattgtggaaaacacagagacagctattgacacgaaagaaaaaaaatcagctcagt
tcactagctgaggatgctctttcaaaagctaattttgaaaactatagttcaagaacacgg
gactctttagcttcttggactccagattgcataggattcaatctcatcgaggctgtccta
tgccatatatgcagaaaggaaagacctggggctgttctagtgtttatgactggatgggat
gatatcagttctttgcgagatcagctgaaagcacatccattattaggagatccaaacagg
gttcttttgctttcatgtcatggttcaatggctacttcagagcagaaaattatctttgag
agacctccacctaatgtacgcaaaatagttctggctacaaatatggctgaggctagtata
actatcaacgatatcgtctttgtggttgattgcggtaaagcgaaagagacctcttatgat
gctttaaacaataccccatgtttgcttccttcctggatatctaaagcatctgcacgtcag
aggaggggcagagctggtcgtgttcaaccaggagaatgctatcacttatatccaagatgc
atgtatgatgcttttgcagaatatcaacttccagagcttcttagaactcccttaaattct
ctttgcttgcaaattaaaagtttgcaggtcggcagtattgctgagttcttgtctgctgct
ttacagccaccagaacctctcgctgttcgaaatgcaattgattttctgaagctgattgga
gctctggatgaaaaggagaatttaacaaatcttgggcgatatttgtcgatgcttcctgtt
gatccaaagcttggcaagatgcttataatgggtgcagtctttcgttgccttgacccagtt
cttacaattgttgctggattgagcatgagggatccatttctgttaccccaagataagaaa
gagctagcaggaacagcaaaatcaagattctctgccaaggactacagtgatcatatggct
cttgtccgtgcttatgaagggtggaaagatgcagacagggaaggttcggcttatgaatat
tgttggaggaactttttgtctgctcagacatttcaagccatccattctcttcgaaagcag
tttaacttcatcctaaaggatgcgggcttgttagatggtgatgctaacatctgcaatagc
ttgagtcataatcagtcactggttcgtgctgtcatctgttctggcctctttcctggcata
gtttctgtagtgcacagagaaaaatccatgtcattcaaaacaatggatgatggccaagtt
ctactatatgttaactctgtaaattcacggtatcagacaatcccatacccttggctcgtt
ttcagcgaaaaagtgaaggttaatgctgtgtttatacgtgattccactggaatatccgac
tccatattgatcctctttggggggattattactcgtgggtctatggctggacacttgaaa
atgttggaaggctatattgatctcttcatggaaccaagtatggcagagttgtattggaac
ctcaaggaggagctggataagcttatgcaaagaaagcttgaagatccaactctggacatt
cacaaagtgggcaaataccttatgcttgcagtgcaagagttggtatcggccgaccaatgt
gaaggaaggtttgtgtttggccgtgaatccaagaaaaggccttctgatgcgaattcaagt
atcaaacatcacacaaaccctaaaagcttacttcaaactctcctgatgagggctggtcat
acacctcctagatacaagactaagcatcttaggaccaacgagttcagggcattggtggag
ttcaagggaatgcagttcgtaggaaaaccaaaaaggaacaaacagcttgcagagagggat
gcggccattgaggccttaggatggttgacacagacttctgataagaaggatgaagaagat
gattcgcctccagacctcactgagaacatgtttaagctgctcaccaagcccaggaaatca
aagcaccgaagaagttga
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