KEGG   Nymphaea colorata (blue-petal water lily): 116263753
Entry
116263753         CDS       T07418                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03020  RNA polymerase
ncol03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116263753
  09124 Replication and repair
   03420 Nucleotide excision repair
    116263753
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncol03021]
    116263753
   03019 Messenger RNA biogenesis [BR:ncol03019]
    116263753
   03400 DNA repair and recombination proteins [BR:ncol03400]
    116263753
Transcription machinery [BR:ncol03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     116263753
Messenger RNA biogenesis [BR:ncol03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116263753
DNA repair and recombination proteins [BR:ncol03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116263753
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 116263753
NCBI-ProteinID: XP_031499387
LinkDB
Position
11:6649782..6658000
AA seq 177 aa
MFFHIVLERNMQLHPRHFGPRLREKLVSKLMKDVEGTCSGRHGFVVAITNVDNIGKGLIR
DGTGYVTFPVRYQCVVFRPFKGEILEAVVTVVNKMGFFAEAGPVQIFVSSHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATDIFCIGTIKDDFLGVINDPGAAA
NT seq 534 nt   +upstreamnt  +downstreamnt
atgttcttccacattgttctggagcggaacatgcagctccaccctcgccacttcggccct
cgtcttcgagagaagctcgtctccaagctcatgaaggatgttgaaggcacctgcagtggt
cggcacggctttgtggtggccataacgaatgtagataacattgggaagggcttgatccgt
gatggcactggctatgtcacattcccagtccggtaccagtgtgtcgtcttccggccgttt
aagggtgagatcctcgaagctgtggtcacagtggttaataagatgggtttctttgctgaa
gcagggccagttcaaatctttgtctctagtcatttgataccggatgatatggagtttcag
tctggtgatatgccaaattatacaacttcagatggttcggtaaagatccaaaaagatagt
gaagtgcggctgaagattatcggtactcgtgttgatgcaactgacatattctgtattggt
accataaaggatgactttttgggtgtcattaatgatccgggcgctgcagcatag

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