Nymphaea colorata (blue-petal water lily): 116264043
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Entry
116264043 CDS
T07418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116264043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116264043
03012 Translation factors [BR:
ncol03012
]
116264043
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116264043
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116264043
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116264043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
nSTAND3
ATPase
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
116264043
NCBI-ProteinID:
XP_031499813
LinkDB
All DBs
Position
11:complement(18220027..18234881)
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AA seq
1192 aa
AA seq
DB search
MPFSSLFLCRAVGGGRPRLLAMSLTTPTLHFLPLKDCPLHQRWRSFYCLCPASRLRGVVA
ASSSSSSPSTVSTRSRVLDPRQSDGLFCPANSSFSSIQPSSKYGRFAFDEYSEDDSDVEV
ESSKGQSSTLDNVDDWKWKLSMLLRNKDDQEIASRERKDRRDYEQIAVLAARMGLYSRQY
SRVVVVSKVPLPNYRADLDDKRPQREVNISPILQRKVDSLLQRFLAQKPRSVVDLSNLSI
SNGHSITSPEGSGDGFFDQQETQKPVNAIMENILRRKSLQLRNQQQEWQESPEGQKIQEF
RRSLPVYKERDTLLSAISQNQVIVVSGETGCGKTTQLPQYILESEIDAARGATCNIICTQ
PRRISAMAVSERVAAERGEKLGESVGYKVRLEGARGRDTRLLFCTTGVLLRRLLVDRNLK
GVSHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSAYFGKAPMLHI
PGFTHPVRAHFLENILETTGYYLTPYNQIDDYGQERKWKMQQQALRKRKSQITALVEDAL
ETADFKKYSFRVREALSCWNPDSIGFNLIESVLCHICKNERPGAILVFMTGWDDINTLKE
QLQAHPLLGDRSKVLLLACHGSMASTEQRLIFDRPEDGVRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFAE
YQLPELLRTPLQSLCLQIKSLQLGGITEFLSKALQPPEPLSVQNAVDYLKIIGALDQKEN
LTILGRYLSMLPVEPKLGKMIILGSMFKCLDPILTVVAGLSVRDPFLTPFDKKDLAESAK
SQFSAKDYSDHLALVRAYDGWRNAEREGAGYEYCWRNFLSAQTMKAIDSLRRQFFCLLKD
TGLVDDNADECNMWSCDEYLVRSVICAGLYPGVCSVVNKEKSIAMKTMEDGQVLLYSNSV
NGRELRIPYPWLVFNEKVKVNTVFLRDSTAISDSTLLLFGGHVSRGEVDGHLKMLDGYLE
FFMKPVLADTYVSLKNELEELIHKKLLNPKMDFHVYESLISAVRLLLSEDLCEGKFVFGR
QVLKPQKSVKSLLPKPGSGGDNSKNQLQTLVVRAGHGPPTYRTKQLKNYQYRAVVEIGGM
QFMGSPCQNKRLAEKDAANEALRWLTDGGMANSHQNIRSASTLLKKDKRRRA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcccttctccagccttttcctctgcagggccgttggaggaggccgacccaggcttctc
gccatgtctcttaccactcctaccctccatttcttgccgttgaaggactgcccacttcat
cagcgctggcgttccttctactgtttgtgtccggcctctcgccttcgcggcgtcgtcgcc
gcctcctcgtcctcctcctccccttccacagtctccactcgctcgcgagttctcgatcct
agacagagcgatgggctattctgtcccgccaattcttctttctcttcgattcagcctagt
tcgaagtacggccgctttgctttcgacgagtactcggaggatgattctgatgttgaagtc
gagtccagtaaggggcaatcatcaactcttgataatgttgatgactggaagtggaaactg
tccatgctgctaagaaataaggatgatcaggagatagcgtccagagagagaaaagataga
agggactatgagcagattgccgttctggccgctagaatgggtttgtatagccgtcagtat
tcaagagtggttgtggtgagtaaagttccattgccaaactacagggctgatcttgatgat
aaacgaccacaaagagaggttaacatctcccctattttgcaaagaaaagtggatagttta
ctccaacgatttcttgctcaaaagcctagaagcgtagtggatttgtccaatctttctatc
tcaaatggacactccatcactagtccagaagggagtggggatgggttctttgatcaacaa
gagacccagaaacctgtaaatgcgatcatggaaaatatcttgaggcggaaaagtttgcaa
cttcggaaccagcagcaagaatggcaggaatcgcctgaaggccaaaaaattcaagagttt
cggagaagccttcctgtttacaaggaaagagatacattactaagtgccatttctcagaat
caggttattgtggtttctggtgaaactgggtgcggtaagactacacagcttccacagtac
attttggaatcagaaatagatgctgcccgtggagcaacatgcaacattatctgtacccag
cctagacgtatttctgcaatggctgtttctgaaagggttgccgctgagagaggagagaag
ttgggtgaatctgttggttataaggttcgtttggagggtgcaagaggaagggacactcgc
ctacttttctgcactactggtgttcttctgaggagactgcttgttgatcgaaatctcaaa
ggtgtaagtcatgttattgttgatgagatccatgaacgtgggatgaatgaagacttcctg
ctcattgtcttgaaagaattgctgcctcgcagacctgaactaaggttgattttgatgagc
gcaactctcaatgcagaactcttttcggcctactttggcaaggctccaatgctgcatatt
cctggattcactcatcctgttcgtgcccatttcttggagaatattcttgagactactggc
tactatttgactccatataatcagatagatgattacggacaagaaaggaagtggaaaatg
caacaacaagctcttaggaagagaaagagtcaaatcactgctcttgttgaggatgcgtta
gagacagctgacttcaagaaatacagctttagagtgcgagaggccttgtcatgttggaat
cctgattctataggttttaacctcattgaaagtgtgctatgtcatatctgcaaaaatgaa
agacccggtgcaattttggtattcatgacgggttgggatgacattaatactctcaaggaa
cagcttcaggctcatcctctccttggagatcgtagcaaagtacttctacttgcatgccat
ggatctatggctagtacagagcagaggttgatttttgataggccagaagatggtgtgaga
aaaatagttctggccactaacatggctgagaccagtattacaatcaacgatgtagttttt
gttgttgactgtggaaaagcgaaggagacttcttatgatgcattgaataatactccatgc
ttgcttccatcttggatctcaaaagcttctgcccgtcagagaagaggaagagctggtcgt
gttcagcctggtgaatgttaccatctgtatccacgatgtgtttatgatgcttttgcagag
taccaattaccagagcttttgagaacaccattacaatctttatgccttcaaataaaaagt
ctccagctgggtggcattacagaattcctgtcaaaggctttacaaccaccagaaccactc
tctgttcaaaatgctgttgattacttgaagattattggagctttggatcagaaggaaaac
ttgactattcttggacgttacttgtcaatgcttcccgtggaaccaaaactcggaaagatg
attattttggggtctatgttcaaatgccttgatcctattttgactgttgtagctggctta
agtgttcgggatccttttctaacaccatttgataagaaggatcttgctgagtctgcaaaa
tcccagttctctgctaaggattacagtgatcatcttgcactggttcgagcatacgatggg
tggagaaatgctgagagagaaggtgcaggttatgagtactgttggaggaactttctttca
gctcaaactatgaaagctattgattctcttcggaggcaattcttttgcctactgaaggat
acaggcttagttgatgataatgctgatgaatgcaatatgtggagctgcgatgagtatctc
gttcgatcggttatatgtgctggtttatatcctggagtttgttcggttgtgaataaggaa
aaatcaattgctatgaagacaatggaggatggtcaagtcctgctgtactctaattcagtc
aatggccgagaactaagaattccatatccatggctagttttcaatgagaaagtgaaagta
aacacagtgttccttcgtgattcaacagcaatctctgattctacactgctgctgtttggg
ggtcatgtttctcgtggtgaagttgatgggcacttgaaaatgttggatggttacttggaa
ttcttcatgaagcctgtccttgcagatacatatgtttctctaaagaacgagctggaagaa
ctgatccataaaaagcttctgaacccaaaaatggattttcatgtctacgagagtcttata
tctgcagttaggttgctgctatcagaagacctgtgtgaagggaaatttgtttttggacgt
caagttttaaaacctcaaaaatcggtgaaatcgttgcttccaaagcctggttcaggaggc
gataattctaagaatcagttgcaaacattggttgtaagagcaggacatggcccaccaact
tatcgaacgaagcaattaaagaactaccagtacagagctgtggttgagattggcggtatg
cagttcatgggaagtccatgtcagaacaaaagacttgcagagaaagatgcagctaatgaa
gcgttgcgttggctgactgatggtggaatggctaattctcatcaaaatattaggagtgca
tccacgctgctgaaaaaagataaaaggagaagagcatga
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integrated database retrieval system
