Nymphaea colorata (blue-petal water lily): 116264074
Help
Entry
116264074 CDS
T07418
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116264074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116264074
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116264074
mRNA degradation factors
5'-3' decay
Decapping complex
116264074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
116264074
NCBI-ProteinID:
XP_031499880
LinkDB
All DBs
Position
11:12551479..12608170
Genome browser
AA seq
800 aa
AA seq
DB search
MEGSDDDGTSSQENPKEFRDAGFSGNTRFDASQYAFFGKNVAEEVELGGLDDADDLLVGF
DDEEYRFSSIGEREEVEGMEGFSELDDLATTFMKLNKADEEPRSIESIGNREFLSRESSS
AADWSREPDISNWADQNMMDSSSTHLGKRWSSQPHPSSVQLTESKEQLYRTSSYPEQLQH
HPHSDPILVPKSSFNSYPPPGGQLHASPNQSQFSPGNPLSFAGPIISHPPYGMHSGNAMP
HQFFPHGLPNKNGTHQNNWVNQRSVFYENHVPPLPGIVHQQLPSNGLMSSQLLQQQQQRL
HSMQAPMSHYPVVQQQLFNVHSSPPSHMMNKCEPMLGMPDLREQRQKPYHWGRQQAANTR
FGPSSFDTSGQRSDNGWPQFRSKYMSAEEVENILRMQHAATHCTDPYIDDYYHQACLAQK
SAGSRVKHHFCPSHLRDMPPRARANSEPHAYLQVDALGRVPFSSIRRPRPLLEVDPPSSS
NDITFDQKPIEKPLEQEPMLAARIMIEDGLCLLLDVDDIDRVLQFTQPQDGGAHLRRRRQ
VLLEGLAASLQLVDPLGHSKGSHPVNLAPKDDLVFLRLVSLPKGRKLLARYLHLLVPDGE
LTRIVSMAIFRHLRFLFGGLPSDQSAAETTTALARTASACVCSMDLSSLSACLAAVACSS
EQPPLRPLGSSAGDGASIILKSVLDRATDLFTDPHMAATYNMSNRALWQASFNAFFKLLT
SYCLSKYDSIIHSLIVHAANTPAVGAEAAKAISREMPVELLRASIPHTNEHQRKLLSDFA
QRSMPVSGFHGHVSSESVQG
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggagggatccgacgatgatggtacctcctctcaggaaaaccctaaggaatttcgcgat
gctggtttctcaggcaacacgcggtttgatgcttcccaatatgcattttttgggaaaaat
gttgctgaagaagttgaattgggtggtttggatgatgctgatgatttacttgtcggattt
gatgatgaggaatatcgattttcttcaattggagagagagaggaggttgaaggcatggaa
ggtttttctgagcttgatgatcttgccactacatttatgaagctaaacaaggctgatgag
gagccaaggagcatagagagcattggaaatcgtgagtttttgtccagagaaagttcatct
gcagctgattggtcacgggaaccagatatttcaaattgggcagaccagaatatgatggat
tctagtagtacccatttgggaaagagatggtcatctcagccgcatccatcctcggtgcaa
ctcactgaatcaaaagaacaactgtatagaacttcatcttaccctgaacaactacaacat
catcctcattctgaccccattcttgtgcccaagtcatccttcaactcgtatcctccacct
ggtggtcagctccatgcttcacctaatcagtcgcaattttctcctggaaatcctctgtct
tttgctggaccgatcatttcccatcctccctacggaatgcactctggtaatgccatgcct
catcagttctttcctcatggacttccaaataaaaatggaacccatcaaaataattgggtg
aaccagagaagtgtattctatgaaaatcatgtgccacctttgcctggtatcgtgcatcag
cagttaccgtccaatgggttgatgtcttcacagttactgcagcagcagcagcaaagactg
cattctatgcaggcacccatgtctcattatcctgtggttcagcagcagttatttaatgtg
cattcgtctcctccatctcacatgatgaacaagtgtgaacctatgttggggatgccagat
cttagagagcaaagacaaaaaccgtaccactgggggcgccaacaagcagccaatacgcga
tttggtccatcaagctttgatacaagtggccaacgaagtgataatggttggcctcaattt
cgttcaaagtacatgtcagctgaagaggttgagaacattcttagaatgcagcatgctgct
actcattgcactgatccatatatagatgattactaccatcaagcatgcctagcccaaaag
tctgctggatcaagggtgaaacaccatttttgcccttcacatttgagggatatgcctcca
cgtgcacgtgcaaattcagaaccacatgcctacttgcaggttgatgcacttgggcgtgtt
ccattttcttctatccgaaggcctcgtcctttgcttgaagttgatccaccttcatcatca
aatgatatcacctttgatcaaaagcctattgagaaacctcttgagcaagagcctatgctt
gcagctaggatcatgattgaagatggactttgtcttttactggatgttgatgatattgac
cgtgtgttgcaatttactcagccacaagatggtggtgcccatcttcgacggaggaggcag
gttcttttggaggggctagctgcctctttgcaactggttgatccacttggccatagcaaa
ggcagccatcctgtcaacttggcaccaaaggatgaccttgtattcttgcgcttggtgtct
cttccaaagggtcgtaagcttcttgccaggtatctccatctccttgtccctgatggagag
ctgacacggattgtttccatggctatattccgtcacctgaggtttctatttggtggccta
ccatcagatcaaagtgccgcagaaacgactactgctctggctaggaccgcctctgcatgt
gtgtgcagcatggatctcagttcattgagtgcttgccttgctgcagttgcctgttcatca
gagcaaccacctctgcgcccacttggaagttctgccggtgatggtgcttccatcatcttg
aaatctgttcttgatagagcaacggatctctttactgaccctcacatggctgccacatac
aacatgtctaatcgtgctctttggcaggcatcattcaatgccttctttaagttactcact
agttattgcctgagtaagtatgacagcatcatccattcattgatcgtccatgctgccaac
acaccggctgttggggctgaggcagcaaaagcaataagcagggaaatgccagtcgaattg
cttagggccagcattccacacacaaatgagcatcagcgcaagttgctgtcagatttcgca
cagcggtccatgcctgtttctggtttccatggacatgtaagctcagaatctgtgcaggga
taa
DBGET
integrated database retrieval system
