Nymphaea colorata (blue-petal water lily): 116264352
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Entry
116264352 CDS
T07418
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116264352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116264352
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116264352
mRNA degradation factors
5'-3' decay
Decapping complex
116264352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GSIII_N
Motif
Other DBs
NCBI-GeneID:
116264352
NCBI-ProteinID:
XP_031500356
LinkDB
All DBs
Position
11:complement(8276032..8280915)
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AA seq
560 aa
AA seq
DB search
MVGKCSLVVSAAQILIILDGDIAQLVADVIRAPMVEEDATDVTHWFTALVQFRIFARHHF
WSSSNGLMSSQLLXQQQQQRLHSMQAPMSHYPMVQQQLFNVHXPPSHMMNKCEPMLGMLD
LREQRQKPYHWGGNKQPIRFGQSSFDTSGQQSDNGWPQVRSKYMSAEEVENILRMQHAAT
HCIYTYIDDYYHQACLAQKSVGSRLKHHFFPSHLRDMPPRARANSEPHNYLQVDALGRVP
FSSIXRPRPLLEVDPPSSSSDITFDHKPIEKPLEQEPMLAARIMIEDGLCLLLDVDDIDH
VLQFSQPQDGGAHLRRRRQVLLEGLAASLQLVDPLGHGKGSHPVNLASKDDLVFLRLVSL
PKGRKLLARYLHLLVPDGELTQIVSMAIFRHMRXRTVSACVCSMDLSALSACLAAVACSS
KQPPLHLLGSSVGDGAFIILKSVLDRATDLFTDPHMAATYNMSNRALWXASFSSFFELLT
RYFLSKYDNIIHSLIIHAANISAVGAEAEKAISREMPVKLFRASILHTNEHQRKLLSDFA
QQSMPISSFHGRVTPESAQR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaaagtgcagcttagttgtcagtgctgcgcaaatcctaataatcctcgatgga
gatatagctcaattggtagcagatgtgatcagagcacccatggtggaagaggatgctact
gatgtaactcattggttcactgctttggtgcaatttaggatttttgctagacatcatttt
tggtcatcatccaatgggttgatgtcctcacagttactgtagcagcagcagcagcaaaga
ctgcattctatgcaagcacccatgtctcattatcctatggttcagcagcagttatttaat
gtgcatnntcctccatctcacatgatgaacaagtgtgaacctatgttagggatgctagat
cttagagagcaaagacaaaaaccgtaccactggggtggcaacaagcagccaatacgattt
ggtcaatcaagctttgatacaagtggccaacaaagtgataatggttggcctcaagttcgt
tcaaagtacatgtcagctgaggaggttgagaacattcttagaatgcagcatgctgctact
cattgcatttatacgtatatagatgattactaccatcaagcatgcctagcccaaaagtct
gttggatcaaggttgaaacaccattttttcccttcacatttgagggatatgcctccacgt
gcacgtgcaaattcagaaccacataactacttgcaggttgatgcacttgggcgtgttcca
ttttcttctatctgaaggcctcgtcctttgcttgaagttgatccaccttcatcatcaagt
gatatcacctttgatcataagcctattgagaaaccacttgaacaagagcctatgcttgca
gctaggatcatgattgaagatggactttgtcttttactggatgttgatgatattgaccac
gtgttgcaatttagtcagccacaagatggtggtgcacatcttcgaaggaggaggcaggtt
cttttggaggggttagctgcctctttgcaattggttgatccacttggccatggcaaaggc
agccatcctgtcaacttggcatcaaaggatgaccttgtattcttgcggttggtgtctctt
ccaaagggtcgtaagcttctcgccaggtatctccatctccttgtccctgatggagagctg
acacagattgtttccatggctatattccgtcacatgaggnntaggactgtctctgcatgt
gtgtgcagcatggatctcagtgcattgagtgcttgccttgctgcagttgcctgttcatca
aagcaaccacctttgcacctacttggaagttctgttggtgatggtgctttcatcatcttg
aaatctgttcttgatagagcaacagatctctttactgaccctcacatggctgccacatac
aacatgtctaatcgtgctctttggtaggcatcattcagttccttctttgagttactcact
aggtatttcctgagtaagtatgacaacatcatccattcattgattatccatgctgccaac
atatcggctgttggggcagaggcagaaaaagcaataagcagggaaatgccagtcaaattg
tttagggccagcattctacacacaaatgagcatcagcgcaagttgttgtcagattttgca
cagcagtccatgcctatttctagtttccatggacgtgtaaccccagaatctgcgcagaga
taa
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