Nymphaea colorata (blue-petal water lily): 116265768
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Entry
116265768 CDS
T07418
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116265768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116265768
03036 Chromosome and associated proteins [BR:
ncol03036
]
116265768
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116265768
Coactivators
SAGA/TFTC/STAGA complex
116265768
Chromosome and associated proteins [BR:
ncol03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116265768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Defensin_like
Motif
Other DBs
NCBI-GeneID:
116265768
NCBI-ProteinID:
XP_031502514
LinkDB
All DBs
Position
12:22061974..22069107
Genome browser
AA seq
998 aa
AA seq
DB search
MDPSIMKLLEEDEDEHMHSGADVEALTAALNRDIGGTLLPQTTTCTVESDPGALSHGDAS
SPSLSFGQWQQSALEEENVKQEHMQEVHQLQQIQGKHPCVMDQLKHGEDARPLEQKSGII
SSGGDQPLCDQKQVQAQDQTLQPAQGQQMSVENNQLSGKSSGQGIEKETFQKGGQYLKSL
PSNAQDAALGNQHLHPVSTQQSSAVAQSSNPKQPSKPGTIPFALLLPVLTPHLDKDRTMQ
LQTLFVRLRKNEVSKEDFLRVAKDIVGDQMLRKAVELMQEKHMQLRNSQKTPRGQSRYQF
QSSSPLQDSGLSGYNHPQVAETQSSSQIHALPNTSHKRLHDQQSKIPNVQMQANLSLPAS
ETTAQKARQGTDHHPDRQGVSSNQAVPVNVGQVIQETESSKVLVPSVDQQHQQQQQQQQH
MPFPQSSFSMYGGTVANYYSYGFSMPSVTAQGGPAKMQGQDPQVRQMANSQGMAPPQLPS
SQPLNLKTVPKHDLQSPRNETKRPQSVSHPQITGVSAFQPNPSMWQTSLDKELKIGGLPS
SSHMKQETSDHVMDHQHKPFMSGQGTPFSPMNIDSGNSSHGPIKEEALEKQSGRVNFTAA
GNVLPANPFSSSLPTHLEHSTQNAPSSAATIHLQTSSTPAPPAGNTNARATSKKTSAGQK
KPLDASASPTQLPTKKQKTSGEYQDQSIEQLNDVTAVSGVNLKEEEEQLLSAPKEESRAS
EAMRRLVQEEEERLILQRDLLQRKVAQIMAKSGIKNASSDVDQCLSMCVEECLRGLLCKL
IRMSKQRADLERGRHKVVVTSDVRRQILLMNRKAKEELEKKHAEEAEKLQKQNEAEGNTA
TDTEKDDGRMKSVKVNKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGV
DGASGKDVNRKALAISAKAMSSSDNHTEGRATSGTAYGVRSYGRSPIGMGQAKIARTISI
KDVISVLQREPHLAQSTLLYRLYEWMPNDSTEKAGETT
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcgatcatgaagctgcttgaagaagacgaggacgagcacatgcattccggg
gcagatgttgaggcgctcaccgcggcgctcaatcgggatatcggaggcacgctcttacct
cagacaaccacctgtacggtggaatctgatcctggtgccttgtcccatggtgacgcatcc
tcgccttctctttctttcggacaatggcagcaatctgcactagaagaagaaaatgtcaag
caagagcatatgcaggaagtgcatcaactccagcaaatacaagggaagcacccatgtgta
atggaccaattaaaacatggggaagatgcaaggcctctggaacagaaaagtggtataatc
tcatcaggtggtgaccaacctctgtgtgaccagaagcaagttcaagctcaggatcaaact
ttacaacctgcacaaggccagcagatgtctgtagagaataatcaactttccgggaaatcc
tctggacaaggaatagaaaaggaaacctttcaaaagggtgggcaataccttaaatcacta
ccatctaatgcacaggatgctgccttaggtaaccaacatttgcaccctgtgagtactcag
caatcatctgcagtggcacagtcaagtaatccgaaacagccttccaagccaggaactatt
ccttttgccttgttgcttccagttttaactcctcaccttgacaaagacaggaccatgcag
ctacaaacacttttcgtcagattgaggaaaaatgaggtttcaaaggaagactttttaaga
gttgctaaagacatagtgggggatcagatgctcagaaaggctgtcgaactaatgcaggag
aagcatatgcagcttcggaattcccagaaaacaccgagaggtcaatctaggtatcaattt
cagtcttctagtcccttgcaggattctggtctttctggttacaatcatccacaggtagcc
gagactcaatcatcatcacaaattcatgctttacctaatacatcccataagaggttgcat
gatcaacaatcgaaaatcccaaatgtgcaaatgcaggcaaacttatcccttcctgcttct
gaaaccactgctcagaaagctaggcagggtaccgatcatcatcctgatagacagggagtc
tcttcaaatcaagcagtccctgttaatgtgggccaggttattcaggaaacagaatcctcg
aaggtcttagtgccatctgttgatcagcagcaccagcagcagcaacaacaacagcaacat
atgccgttcccacagtcatcgttttcaatgtatgggggaacagtggcgaattattattca
tatgggttttctatgccatctgtcactgcacagggaggtcctgctaagatgcagggacaa
gatcctcaagttcgacaaatggcaaattcccaaggaatggctccacctcagttaccatca
tctcagcctttgaacctgaagactgttcccaaacatgacctgcaaagtcccagaaatgaa
accaagaggccacaaagtgtatcacacccacagataactggtgtgtcagcatttcaacca
aatccaagcatgtggcaaactagcttggataaagaactgaagattggtggactgccatcg
tcgtcacacatgaaacaggagactagtgaccatgtaatggaccatcaacacaaacctttt
atgtctggtcaggggacacctttcagtccaatgaacattgactcagggaattcaagtcat
ggtcccataaaggaagaagctttggagaagcaatctggcagggtaaacttcacggccgct
ggaaatgttctccctgcaaatccattttcaagctccttgccaacacatctagaacattca
acacagaacgcaccatcatctgctgctacgatacaccttcagacttcttctacacctgcg
cctccagctgggaacacaaatgcaagggcaacttcgaaaaaaacttcagcggggcaaaag
aagccacttgatgcttctgcttctccaacacaacttcccactaaaaagcaaaagacatct
ggtgaatatcaagatcagagcattgagcaacttaatgatgttactgcagtcagtggcgtg
aacctaaaggaagaggaggagcagctgctttctgcacctaaagaggaaagtcgagcttca
gaagccatgcgacggcttgtacaggaagaagaagagaggctaattttacaacgggatctg
ttacagagaaaagtagcacaaatcatggccaaatccggtataaagaatgccagcagtgac
gttgaccagtgtttgtccatgtgcgtcgaggaatgcctacgaggattgctatgcaagctc
attagaatgtcaaagcagagggcagatcttgaaagggggagacacaaggttgtggtcact
tcagatgttcggcgacagattctgttaatgaatcggaaagcaaaagaggaactggagaaa
aaacatgcagaagaagctgagaagctacaaaaacagaatgaggctgaaggaaacactgca
acagatacagaaaaggatgacggccgtatgaaatcagtcaaggtaaacaaggaagaagat
gacaaaatgcgaacaacggcagcaaatgttgcagcccgagcagctgtggggggagatgac
atgctatcaaaatggcaactcatggctgaacaagcaagacaaaaacgtgaaggtggagtt
gatggagcatctggcaaggatgtaaaccgtaaggccttggcaatttctgcaaaggctatg
agcagctccgacaatcacactgagggccgagcaacctctggtacagcatatggtgtcaga
agttatgggaggagtcccattggaatgggtcaagccaaaatagcaaggaccatctctatc
aaggatgtgatctctgttcttcaaagagaacctcacctagcccagtctacattgctttac
cggttgtatgaatggatgcctaacgattcaacggaaaaagctggggaaacaacatga
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