Nymphaea colorata (blue-petal water lily): 116266038
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Entry
116266038 CDS
T07418
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116266038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116266038
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116266038
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116266038
NCBI-ProteinID:
XP_031502965
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Position
12:15908444..15918898
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AA seq
255 aa
AA seq
DB search
MTSKGRGVSVPTYSPTVGARKSRASRDSKDGLRVDGRNPHQCRPAFMRTGAVNAAVGSAY
AEFGSTKVIVSVFGPRESKKAMAYSDVGRLNCSVSFMTFSTQIRGQGSEDKEMSSMLHKA
LEGAIMLETFPKTTVDVFALVMESGGGDLPVIISCASLALADAGIKMLDLVTSTSLSCHG
MDLVIDPTLEEERCQDGGFMISFMPSRNEVTQLAITGEWSTAKVAEAMELCIDACLKLGN
VMRECLKAAATSVSE
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcaaaggtcgaggagtcagcgtccccacatactctccaacagtgggtgcgaga
aagagtagagcatcccgagactcaaaagatggattgcgggtcgatggccgcaacccccat
caatgtagaccagcatttatgagaacgggcgcagtgaatgcagcagttggttctgcttat
gctgaatttggcagcacaaaggtcattgtttcagtatttggtcctagagaaagtaaaaaa
gcaatggcatatagtgatgtagggcggctgaattgtagtgtgagcttcatgacattctcc
acacagattcgtggacagggctcagaagacaaagagatgtcctcaatgcttcataaagct
ttggagggtgctataatgttggagacttttcccaagacaactgtagatgtttttgctttg
gtcatggagtctggtggcggggatcttcctgtaattatatcatgtgcaagccttgcactt
gctgatgctgggattaagatgttggatcttgtaacttctacctctctgtcttgccatggc
atggaccttgttattgaccctacactggaagaagagcgctgtcaagatggtggatttatg
atttcttttatgccttcacgtaatgaggtcactcagttggccataacaggagagtggtcg
actgcaaaagtagctgaggcaatggagctttgcatagatgcatgtttgaagctgggaaat
gtcatgagagaatgcttaaaagcagcagctacctctgtttccgagtag
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